PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005393P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 161aa    MW: 18781.7 Da    PI: 10.2948
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005393P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.7e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++ rqvtfskRrng+lKKA+ELSvLCdaev+viifs++g+lye+ss
  MELO3C005393P1  9 KRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSS 59
                    79***********************************************96 PP

2K-box51.64.1e-1882156983
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                      +e  +++l+qe++   k+ie+L+++q +llG +L+s+s++eL+++e+qL  sl++iR++K +l+++q e+l +k
  MELO3C005393P1  82 RSEGYMQQLKQEAEMTAKKIEQLEKSQQKLLGRGLDSCSFEELREIERQLVLSLTRIRETKAQLFKDQKEKLIEK 156
                     677789***************************************************************998665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.562161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-31323IPR002100Transcription factor, MADS-box
CDDcd002658.50E-42372No hitNo description
SuperFamilySSF554551.83E-33378IPR002100Transcription factor, MADS-box
PfamPF003195.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.61687160IPR002487Transcription factor, K-box
PfamPF014867.5E-1788156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVRGKVEMKR IENSTSRQVT FSKRRNGLLK KAYELSVLCD AEVSVIIFSQ KGRLYEFSSS  60
DMQKTIERYR KHGKEGQSNP FRSEGYMQQL KQEAEMTAKK IEQLEKSQQK LLGRGLDSCS  120
FEELREIERQ LVLSLTRIRE TKAQLFKDQK EKLIEKIIVQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-21178178Myocyte-specific enhancer factor 2B
1tqe_Q5e-21178178Myocyte-specific enhancer factor 2B
1tqe_R5e-21178178Myocyte-specific enhancer factor 2B
1tqe_S5e-21178178Myocyte-specific enhancer factor 2B
5f28_A5e-21178178MEF2C
5f28_B5e-21178178MEF2C
5f28_C5e-21178178MEF2C
5f28_D5e-21178178MEF2C
6c9l_A5e-21178178Myocyte-specific enhancer factor 2B
6c9l_B5e-21178178Myocyte-specific enhancer factor 2B
6c9l_C5e-21178178Myocyte-specific enhancer factor 2B
6c9l_D5e-21178178Myocyte-specific enhancer factor 2B
6c9l_E5e-21178178Myocyte-specific enhancer factor 2B
6c9l_F5e-21178178Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818951e-96LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-96LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008467251.11e-109PREDICTED: MADS-box protein AGL42-like
RefseqXP_016903703.11e-109PREDICTED: MADS-box protein AGL42-like
SwissprotQ9FIS17e-69AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A1S4E6461e-108A0A1S4E646_CUCME; MADS-box protein AGL42-like
STRINGXP_008467250.11e-108(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.33e-71AGAMOUS-like 42