PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005336P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 562aa    MW: 63285.3 Da    PI: 6.1001
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005336P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like36.51.1e-11262308253
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                     +r++W+ e  ++F +a+++L     A Pk il++m+ ++Ltl +v+ HLQ++
  MELO3C005336P1 262 TRVVWNAERRRKFTDALNKL-----ARPKLILKMMNEPCLTLRQVANHLQQH 308
                     79******************.....*************************86 PP
2Response_reg53.71.1e-18211261107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vd +p+ ++ l+++le++ y +v++++ ++ al +++ek   +Dl++  ++mp+md + +l  + + +  + +i++++  + + a++al  G
  MELO3C005336P1  21 VLLVDHDPFSLKHLASLLEQQSY-NVTTTQLASIALSMIQEKGdrFDLVMANVSMPDMDSFSFLHVLLKMN--IAVIFMSSGMNLSVATKALAEG 112
                     89*********************.***************999889**********************8865..********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a  fl Kp+++ +l
  MELO3C005336P1 113 ACYFLQKPISKGDL 126
                     *********99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.5E-2417148No hitNo description
SuperFamilySSF521725.83E-2317142IPR011006CheY-like superfamily
SMARTSM004484.2E-1319130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.93120134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-1521127IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.08E-1722133No hitNo description
Gene3DG3DSA:1.10.10.602.6E-10259309IPR009057Homeodomain-like
SuperFamilySSF466893.23E-7260309IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-9262307IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MEEMGHWVTD SLPSFAKNLH VLLVDHDPFS LKHLASLLEQ QSYNVTTTQL ASIALSMIQE  60
KGDRFDLVMA NVSMPDMDSF SFLHVLLKMN IAVIFMSSGM NLSVATKALA EGACYFLQKP  120
ISKGDLKYMW QHVYRWNRNI TKQTYKANCI ETAKPRKESV GIQITDAVVL SRSAAAVSYN  180
NNCCINYKPM KNKEKDKSEQ IVSHDSLVGS FFGGKRLSAD IEGLNLEKRV KYYSEPTKFG  240
FSRIDEDHER RKECYIASDS RTRVVWNAER RRKFTDALNK LARPKLILKM MNEPCLTLRQ  300
VANHLQQHHE TSRFTNGGLT SIFGGERFQL IAPKSLLSPR LPANNFINHD LTTLSHNFQH  360
IGSNYDSVSY KVSKEVGLCP DNVQSFQKEG GAFRTDNCGK FALIGGGVQT TELNFSSVSK  420
MTPELASSHV FDETQFPDNL LDGVVQEVDL TAFKIENQEE IHSMSRDIAV PDSFSLDNVF  480
DGGQELPAAS ESRGNQQLAE YAYLLDVLEE DPYNFVSDLN LSDVDKYSEW LRNTVLENRS  540
GPDSFISDNA DAENSPVENR R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273ERRRKF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008467175.10.0PREDICTED: uncharacterized protein LOC103504590 isoform X2
TrEMBLA0A1S3CSW90.0A0A1S3CSW9_CUCME; uncharacterized protein LOC103504590 isoform X2
STRINGXP_008467174.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144041618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.14e-33pseudo-response regulator 6