PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005178P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 534aa    MW: 57508 Da    PI: 5.2597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005178P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09350398355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  MELO3C005178P3 350 NSHSLAERVRREKISERMRLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 398
                     58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.95E-11345402No hitNo description
SuperFamilySSF474598.37E-17345416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523347397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16348415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-6350398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10353403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MNGKDEFEVE NRTSDPMSIS SAWQFAAPNL TNESVGFDST GNPSIVSNGD LGVPSCPSTS  60
MSNLFTPALL NHHTESQNSG FCATFNEQNS IVASNTTLVD GEGLSTLRSN GDTRTLGMDW  120
NQQNPWMKGV FSGNVPGIFP PNLSQLPADS AFIERAARFS CFNNGVFGAP PAGPFGISDS  180
IGIHSGGGFG RQEVISRNGA SKDVSLPMEL EAKEKSPPKN EKDSEMSQDR AKQGCVGESG  240
NDSDEAGFSG GQDEQCTMGG TITEPSTEGL CFKKRKRGEQ NVGLGRVKEA SQQINETAKN  300
GAFIQQKGGQ NPSSTTSKPA GKQGKQDSQP SDAPKEEYIH VRARRGQATN SHSLAERVRR  360
EKISERMRLL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDFNIE  420
ELLTKELIQS KAGPSLFGFP PDMPVPYLPQ HSSHHGLIPP CLPTMGSSPD LLRRTINSQL  480
TSLVGGFKEP VQLPNRWENE LDNVVPMNFD VSAPSSGQDV DGSTPQCKTR AEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466092.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_008466100.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_016898796.10.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A1S3CQG60.0A0A1S3CQG6_CUCME; transcription factor bHLH49-like
STRINGXP_008466092.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.23e-86bHLH family protein