PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005178P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 386aa    MW: 41107.2 Da    PI: 5.3117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005178P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.2e-06350377330
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                      +h+ +Er RR++i +++  L++l+P +
  MELO3C005178P2 350 NSHSLAERVRREKISERMRLLQDLVPGC 377
                     58************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-7345379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.37E-5345379No hitNo description
PROSITE profilePS5088811.147347385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-6351378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MNGKDEFEVE NRTSDPMSIS SAWQFAAPNL TNESVGFDST GNPSIVSNGD LGVPSCPSTS  60
MSNLFTPALL NHHTESQNSG FCATFNEQNS IVASNTTLVD GEGLSTLRSN GDTRTLGMDW  120
NQQNPWMKGV FSGNVPGIFP PNLSQLPADS AFIERAARFS CFNNGVFGAP PAGPFGISDS  180
IGIHSGGGFG RQEVISRNGA SKDVSLPMEL EAKEKSPPKN EKDSEMSQDR AKQGCVGESG  240
NDSDEAGFSG GQDEQCTMGG TITEPSTEGL CFKKRKRGEQ NVGLGRVKEA SQQINETAKN  300
GAFIQQKGGQ NPSSTTSKPA GKQGKQDSQP SDAPKEEYIH VRARRGQATN SHSLAERVRR  360
EKISERMRLL QDLVPGCSKV CESSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466092.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_008466100.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_016898796.10.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A1S3CQG60.0A0A1S3CQG6_CUCME; transcription factor bHLH49-like
STRINGXP_008466092.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.26e-41bHLH family protein