PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C004928P3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 464aa MW: 51942.9 Da PI: 8.3539 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.6e-08 | 341 | 389 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r +Rt ++k++w+++l MELO3C004928P3 341 SWTLSEVMKLVEGVSEYGVGRWTEIKRLQFassSHRTSVDLKDKWRNLL 389 5***********************9876558999*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-12 | 334 | 391 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.318 | 334 | 393 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-16 | 336 | 399 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-9 | 338 | 391 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-6 | 341 | 389 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 9.55E-19 | 342 | 390 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MSFLIVLDFN TFHSHKCLGI EHFSFAVDFD QIKIDSESLH SSLTLEGERT KQEGHDEKLR 60 ADDVCSGINK HPGAVNCRTT DDIFNLAPAS SNASFLGNVD FGSYSQGFST TDIGVDLSFA 120 GGHNVAFDQK EGKHMISSST GSSGCSGSTT ACLDDENMSD DRPMKRKRLS SSDSFKTNYE 180 HNESKINPFN EGNRGDTLIT EKRLRKPPRR YSEESVEQKS RSNSKKSALK ASKDKSLHSE 240 SHKQQWQKKV KAAPIIHKDK SFNGGCIQVP FGLPIEEGHS AKKRTCWEPE EIKDNRILCI 300 KDKYEVESFS AESEDENTED ECTTKGNSTQ KGNSRRKHHI SWTLSEVMKL VEGVSEYGVG 360 RWTEIKRLQF ASSSHRTSVD LKDKWRNLLK ASDTQLQNRR KVVLGRKQAS QQVPESVLCR 420 VRELAAIYPY PRENKSKESC SAPSTSSFKS TTNNMFVSLP TVM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681928 | 0.0 | LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008462908.1 | 0.0 | PREDICTED: uncharacterized protein LOC103501169 isoform X2 | ||||
TrEMBL | A0A1S3CI04 | 0.0 | A0A1S3CI04_CUCME; uncharacterized protein LOC103501169 isoform X2 | ||||
STRING | XP_008462901.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 6e-29 | TRF-like 6 |