PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004928P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 517aa    MW: 57845.3 Da    PI: 7.0957
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004928P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.5e-08394442348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g+W+ I r       +Rt  ++k++w+++l
   MELO3C004928P2 394 SWTLSEVMKLVEGVSEYGVGRWTEIKRLQFassSHRTSVDLKDKWRNLL 442
                      5***********************9876558999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.318387446IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-11387444IPR009057Homeodomain-like
SuperFamilySSF466891.0E-15389452IPR009057Homeodomain-like
SMARTSM007175.3E-9391444IPR001005SANT/Myb domain
PfamPF002493.4E-6394442IPR001005SANT/Myb domain
CDDcd116605.21E-19395443No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MNAASKETMM TSNQATKMFT YEFPDVDSDL SIFPVPEDDV LGVEHFLEPD FNKCFSGSVL  60
DFNTFHSHKC LGIEHFSFAV DFDQIKIDSE SLHSSLTLEG ERTKQEGHDE KLRADDVCSG  120
INKHPGAVNC RTTDDIFNLA PASSNASFLG NVDFGSYSQG FSTTDIGVDL SFAGGHNVAF  180
DQKEGKHMIS SSTGSSGCSG STTACLDDEN MSDDRPMKRK RLSSSDSFKT NYEHNESKIN  240
PFNEGNRGDT LITEKRLRKP PRRYSEESVE QKSRSNSKKS ALKASKDKSL HSESHKQQWQ  300
KKVKAAPIIH KDKSFNGGCI QVPFGLPIEE GHSAKKRTCW EPEEIKDNRI LCIKDKYEVE  360
SFSAESEDEN TEDECTTKGN STQKGNSRRK HHISWTLSEV MKLVEGVSEY GVGRWTEIKR  420
LQFASSSHRT SVDLKDKWRN LLKASDTQLQ NRRKVVLGRK QASQQVPESV LCRVRELAAI  480
YPYPRENKSK ESCSAPSTSS FKSTTNNMFV SLPTVM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819280.0LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462901.10.0PREDICTED: uncharacterized protein LOC103501169 isoform X1
TrEMBLA0A1S3CHY40.0A0A1S3CHY4_CUCME; uncharacterized protein LOC103501169 isoform X1
STRINGXP_008462901.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150181313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.28e-29TRF-like 6