PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004928P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 330aa    MW: 37319.8 Da    PI: 9.8961
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004928P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-08207255348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g+W+ I r       +Rt  ++k++w+++l
   MELO3C004928P1 207 SWTLSEVMKLVEGVSEYGVGRWTEIKRLQFassSHRTSVDLKDKWRNLL 255
                      5***********************9876558999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-12200257IPR009057Homeodomain-like
PROSITE profilePS5129413.318200259IPR017930Myb domain
SuperFamilySSF466894.74E-16202266IPR009057Homeodomain-like
SMARTSM007175.3E-9204257IPR001005SANT/Myb domain
PfamPF002491.8E-6207255IPR001005SANT/Myb domain
CDDcd116602.86E-18208256No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MISSSTGSSG CSGSTTACLD DENMSDDRPM KRKRLSSSDS FKTNYEHNES KINPFNEGNR  60
GDTLITEKRL RKPPRRYSEE SVEQKSRSNS KKSALKASKD KSLHSESHKQ QWQKKVKAAP  120
IIHKDKSFNG GCIQVPFGLP IEEGHSAKKR TCWEPEEIKD NRILCIKDKY EVESFSAESE  180
DENTEDECTT KGNSTQKGNS RRKHHISWTL SEVMKLVEGV SEYGVGRWTE IKRLQFASSS  240
HRTSVDLKDK WRNLLKASDT QLQNRRKVVL GRKQASQQVP ESVLCRVREL AAIYPYPREN  300
KSKESCSAPS TSSFKSTTNN MFVSLPTVM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819280.0LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462901.10.0PREDICTED: uncharacterized protein LOC103501169 isoform X1
RefseqXP_008462908.10.0PREDICTED: uncharacterized protein LOC103501169 isoform X2
TrEMBLA0A1S3CHY40.0A0A1S3CHY4_CUCME; uncharacterized protein LOC103501169 isoform X1
TrEMBLA0A1S3CI040.0A0A1S3CI04_CUCME; uncharacterized protein LOC103501169 isoform X2
STRINGXP_008462901.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.23e-30TRF-like 6