PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C004887P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 232aa MW: 25305.1 Da PI: 8.4878

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C004887P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3.2e-19	24	81	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++ps +r++L + + +++ +q+kvWFqNrR +ek+ MELO3C004887P1 24 YVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCpilaNIEPKQIKVWFQNRRCREKQ 81 6789****************************************************97 PP
2	bZIP_1	20.1	1.4e-06	75	117	18	60
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 rr+R++ ++e +L+ +L+a Nk L +e+++l+k+v++l MELO3C004887P1 75 RRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLV 117 9***************************************985 PP
3	START	29.8	1.4e-10	165	222	2	59
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHH CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvla 59 +aee ++++++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v +++ MELO3C004887P1 165 IAEEILAAFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVGLEPM 222 789999***********************************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.7E-19	10	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.418	18	82	IPR001356	Homeobox domain
SMART	SM00389	2.0E-15	20	86	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.48E-17	21	86	IPR009057	Homeodomain-like
CDD	cd00086	3.81E-16	23	83	No hit	No description
Pfam	PF00046	9.8E-17	24	81	IPR001356	Homeobox domain
CDD	cd14686	3.85E-5	75	114	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.6E-4	79	116	No hit	No description
Pfam	PF01852	2.4E-7	165	223	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MAMAHHRENG DGGINGHLDS TGKYVRYTTE QVEALERVYA ECPKPSSLRR QQLVRDCPIL 60 ANIEPKQIKV WFQNRRCREK QRKEASRLQS LNSKLTAMNK LLMEENDRLQ KQVSQLVCEN 120 GYMRQHLQTT NAPAATTTDA ACDSVATTPQ LSLRDASSPA GLLSIAEEIL AAFLSKATGT 180 AVDWVQMPGM KPGPDSVGIF AISQSCSGVA ARACGLVGLE PMKASMFILL I*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269\|PubMed:10559440, ECO:0000269\|PubMed:11169198, ECO:0000269\|PubMed:11402186, ECO:0000269\|PubMed:15111711, ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:20807212, ECO:0000269\|PubMed:22781836, ECO:0000269\|PubMed:7555701}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269\|PubMed:15111711, ECO:0000269\|PubMed:17237362, ECO:0000269\|PubMed:20807212}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681928	1e-123	LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBank	LN713266	1e-123	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008462593.1	1e-159	PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
Swissprot	Q9SE43	1e-125	REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBL	A0A1S3CHC5	1e-158	A0A1S3CHC5_CUCME; homeobox-leucine zipper protein REVOLUTA-like
STRING	XP_008462593.1	1e-159	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19573	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60690.1	1e-119	HD-ZIP family protein

Publications ? help Back to Top
Lian H,Li X,Liu Z,He Y HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis. J. Exp. Bot., 2013. 64(11): p. 3397-410 [PMID:23918970] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Baima S, et al. Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module. Mol Plant, 2014. 7(6): p. 1006-1025 [PMID:24777988] Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Roodbarkelari F,Du F,Truernit E,Laux T ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response. BMC Biol., 2015. 13: p. 74 [PMID:26358077] Shi B, et al. Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis. PLoS Genet., 2016. 12(7): p. e1006168 [PMID:27398935]