PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C004728P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 491aa MW: 54798.8 Da PI: 6.9614

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C004728P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.6	4.2e-11	184	225	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka+i++Le +L++ ++L MELO3C004728P1 184 AKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDL 225 6889*************************9777777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-7	177	226	No hit	No description
SMART	SM00338	1.1E-7	181	247	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.071	183	227	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.0E-8	184	225	IPR004827	Basic-leucine zipper domain
CDD	cd14708	5.63E-22	185	236	No hit	No description
SuperFamily	SSF57959	8.84E-7	185	226	No hit	No description
PROSITE pattern	PS00036	0	188	203	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.6E-31	268	342	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MANQHSATLP NFHGIIHHNP SLPFINPEGS AFDFGELEEA IVLQGVKLGN DEPKSPNFLT 60 GRPAATLEMF PSWPIRFQQT PTLGGGSKSE STDSGSANIN NTLTSKIELE MESGSPINRR 120 TCSSNQGLFD QNHHHHHHLL HLQHLQSEFE DDALRTEASS QQNQSPLKEK RKGGGSTSER 180 QLDAKTLRRL AQNREAARKS RLRKKAYIQQ LESSRIKLSQ LEQDLHRARS QGLFVGACGG 240 VMGGNISSGA AIFDMEYARW LDEDHRLMAE LRAALQGHLP DGDLRAIVDS YISHYDEIFH 300 LKGVAAKSDV FHLITGMWMT PAERCFLWIG GFRPSKLIEM LIPQIDTLTE QQAMGICNLQ 360 RSSQETEDAL YQGLEQLQHS LIITIAGTAV VDGINHMALA AGKLSNLEGF IRQADMLRQQ 420 TLHQLHRILT VRQAARCFVV IGEYYGRLRA LSSLWVSRPR ESSCLNDESS CQTTTELQMI 480 QNSHTHFPNF *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MANQHSATLP NFHGIIHHNP SLPFINPEGS AFDFGELEEA IVLQGVKLGN DEPKSPNFLT  60
GRPAATLEMF PSWPIRFQQT PTLGGGSKSE STDSGSANIN NTLTSKIELE MESGSPINRR  120
TCSSNQGLFD QNHHHHHHLL HLQHLQSEFE DDALRTEASS QQNQSPLKEK RKGGGSTSER  180
QLDAKTLRRL AQNREAARKS RLRKKAYIQQ LESSRIKLSQ LEQDLHRARS QGLFVGACGG  240
VMGGNISSGA AIFDMEYARW LDEDHRLMAE LRAALQGHLP DGDLRAIVDS YISHYDEIFH  300
LKGVAAKSDV FHLITGMWMT PAERCFLWIG GFRPSKLIEM LIPQIDTLTE QQAMGICNLQ  360
RSSQETEDAL YQGLEQLQHS LIITIAGTAV VDGINHMALA AGKLSNLEGF IRQADMLRQQ  420
TLHQLHRILT VRQAARCFVV IGEYYGRLRA LSSLWVSRPR ESSCLNDESS CQTTTELQMI  480
QNSHTHFPNF *

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681928	1e-150	LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBank	LN713266	1e-150	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008461530.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S3CEU5	0.0	A0A1S3CEU5_CUCME; transcription factor HBP-1b(C38)-like
STRING	XP_008461530.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]