PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004650P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRF
Protein Properties Length: 316aa    MW: 36334.3 Da    PI: 9.0237
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004650P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.66e-2576120145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e+
  MELO3C004650P1  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQ 120
                     79****************************************985 PP
2QLQ60.93.6e-21842236
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                    +FTaaQ+q+L++Q+l++Ky+++++P+PpeLl  i+
  MELO3C004650P1  8 PFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIK 42
                    8*****************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.6E-13743IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.6E-16841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.009843IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.91876120IPR014977WRC domain
PfamPF088791.0E-2077119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSARNRFPFT AAQWQELEHQ ALIFKYMVSG VPIPPELLYS IKATSLDTPF ISRLFPHQYP  60
QVGWNYLQMG SGRKIDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG KNRSRKPVEQ  120
VSKTTPLNSS NPSTPAISSI THNSETHPHP HPFHYQSPSA ASSYPSLLPD YRRNRYVYGE  180
KEEDFFVREQ HSGNVRGFTG SSMDDSWQLT PLTMSCSSSS SRYKNCSALQ GDYSSYLQLQ  240
SFGKYNEMQS KMDRDQEPQK TVHHFFDEWS PKHRESWDDL DDKSSNTGSV SATRLSMSIP  300
NTDSFIFSSN KRNEN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459738.10.0PREDICTED: growth-regulating factor 6-like isoform X3
TrEMBLA0A1S3CAW10.0A0A1S3CAW1_CUCME; growth-regulating factor 6-like isoform X3
STRINGXP_008459738.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-57growth-regulating factor 5