PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004630P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 367aa    MW: 42021.7 Da    PI: 6.5233
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004630P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35601512102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Flkk+ye++ed+e++ ++swse+ +sf+v+d+++++k +LpkyFkhsnf+SF+RQLn+YgF+k+++++         weF+++ F+ gkk+ll++
  MELO3C004630P1  60 FLKKTYEMVEDPETDPVVSWSETRKSFIVWDSHQLSKFLLPKYFKHSNFSSFIRQLNTYGFRKIDSDK---------WEFANEGFQGGKKHLLKN 145
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikrk++
  MELO3C004630P1 146 IKRKNK 151
                     ****87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-5756149IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3756149IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.03E-3456149IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-3160149IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196083IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434099123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-19111123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MILPDDGAET GSGESVDEKM SQVVKGEEEI DEVSTAATMN KGGVWAKPME GLHDLGPPPF  60
LKKTYEMVED PETDPVVSWS ETRKSFIVWD SHQLSKFLLP KYFKHSNFSS FIRQLNTYGF  120
RKIDSDKWEF ANEGFQGGKK HLLKNIKRKN KYNNNFKKQH LGLSINNTTL EDLTKPLLVE  180
TELLQTLKTD NNILRVEMSK LREQQQDSHN QLTLVEERVR CAESKHQQMF YFLAKMSRNP  240
AFCRQLIQKR MLRKKMELSN GDHEFGKKRK LLAVQAHQNQ VQEELSTLHS ELTEMFPEVI  300
EPGPGPIGTV FRESIDDDRS ENMVVDEGLS SNDSFLKLDD LIKKPQDCPS GYVQKQAFYG  360
FVGSLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-235814918120Heat shock factor protein 1
5d5u_B1e-235814927129Heat shock factor protein 1
5d5v_B1e-235814927129Heat shock factor protein 1
5d5v_D1e-235814927129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252269RKKMELSNGDHEFGKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459445.10.0PREDICTED: heat shock factor protein HSF30-like isoform X1
TrEMBLA0A1S3CAP80.0A0A1S3CAP8_CUCME; heat shock factor protein HSF30-like isoform X1
STRINGXP_008459445.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-66heat shock transcription factor A2