PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C004566P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | CPP | ||||||||
Protein Properties | Length: 239aa MW: 26549.4 Da PI: 8.6439 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.8 | 1.2e-14 | 17 | 56 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C N+ e+ MELO3C004566P1 17 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCINCYNNVEN 56 89**************************.********9875 PP | |||||||
2 | TCR | 52.6 | 8.8e-17 | 101 | 140 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e MELO3C004566P1 101 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 140 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.4E-16 | 16 | 56 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.57 | 17 | 141 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.0E-11 | 18 | 53 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 101 | 142 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.3E-13 | 104 | 139 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSRARPAMEA KDSTPKKQKQ CNCKHSRCLK LYCECFASGI YCDGCNCINC YNNVENDAAR 60 REAVEATLER NPNAFRPKIA SSPHGMRDSR EEAGELLMLG KHNKGCHCKK SGCLKKYCEC 120 FQANILCSEN CKCMDCKNFE GSEERQALFH GDHGSNMTFI QQAANAAITG AIGSSGYASP 180 PVSKKRKGQE LYFGPTAKDI STHRPGPFQQ VDLIIYYKYK TTSCINLVES LRQKKITL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-34 | 9 | 150 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 2e-34 | 9 | 150 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00269 | DAP | Transfer from AT2G20110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 0.0 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008458483.1 | 1e-159 | PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
Swissprot | Q9SL70 | 1e-116 | TCX6_ARATH; Protein tesmin/TSO1-like CXC 6 | ||||
TrEMBL | A0A1S3C8J3 | 1e-157 | A0A1S3C8J3_CUCME; protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
STRING | XP_008458475.1 | 1e-157 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2626 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.1 | 1e-118 | Tesmin/TSO1-like CXC domain-containing protein |