PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C004556P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HSF | ||||||||
Protein Properties | Length: 304aa MW: 34122.6 Da PI: 6.1627 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.3 | 1.4e-34 | 13 | 105 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F+ k+y+++ d+++++li ws+ +nsf+v d+ e+++++Lp+yFkh+nf+SFvRQLn+YgFkkv+ ++ weF+ ++F +g+k+ll++ MELO3C004556P1 13 FVLKTYQMVTDPTTDDLIGWSKGNNSFIVADPLELSRRILPSYFKHNNFSSFVRQLNTYGFKKVDPDK---------WEFASQWFLRGQKHLLKN 98 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r++++ MELO3C004556P1 99 ICRRRHS 105 **99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-36 | 3 | 97 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-48 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.16E-33 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.7E-29 | 13 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.7E-18 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.7E-18 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 52 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.7E-18 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MESNQQNDAV APFVLKTYQM VTDPTTDDLI GWSKGNNSFI VADPLELSRR ILPSYFKHNN 60 FSSFVRQLNT YGFKKVDPDK WEFASQWFLR GQKHLLKNIC RRRHSRNSYF QTKCEDDDGE 120 IAIEISKLKQ EQRALELEVE SMNKRIEATE KRPQQMMAFL SKIMDNPEIL PRIILQNHRV 180 RRQLPSKRRR LVMPPPPPTP VKVESVLEED SSPEPGVFVD NVALSSPETT LWWDGAASAP 240 VSSPLTSDSG GGLSDYISLS PPDSDVSVYG IGGVRDGYMA ELVDGGGSRP PPPYPFSLFS 300 GGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-24 | 10 | 102 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-24 | 10 | 102 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-24 | 10 | 102 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 190 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 0.0 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016901258.1 | 0.0 | PREDICTED: heat stress transcription factor C-1-like | ||||
Swissprot | Q9LV52 | 7e-81 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A1S4DZ61 | 0.0 | A0A1S4DZ61_CUCME; heat stress transcription factor C-1-like | ||||
STRING | XP_008458351.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8367 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 3e-83 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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