PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004489P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 287aa    MW: 32361.1 Da    PI: 6.1801
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004489P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.81.8e-21210262151
         G2-like   1 kprlrW...tpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                     kpr++W    ++LH++Fv av+ L G ekA+Pk+il+lm+v+gLt+e+v+SHLQ
  MELO3C004489P1 210 KPRVNWydgDENLHRKFVAAVNIL-GYEKAVPKKILDLMNVEGLTRENVASHLQ 262
                     789999444479************.***************************** PP
2Response_reg85.81.3e-28261341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ +++l+++l+k +y +v+++ ++ +al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ e++++ +  G
  MELO3C004489P1  26 VLAVDDDPICLKVLENLLRKCQY-HVTTTNQAVQALKMLRENKnrFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSNTELVKKGVIHG 118
                     799********************.***************888888*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  MELO3C004489P1 119 ACDYLLKPVRIEELKN 134
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.8E-1341263IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.4E-4323157No hitNo description
SuperFamilySSF521722.7E-3723148IPR011006CheY-like superfamily
SMARTSM004485.6E-3424136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.51725140IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-2626134IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.33E-3027140No hitNo description
Gene3DG3DSA:1.10.10.603.3E-20208262IPR009057Homeodomain-like
SuperFamilySSF466891.2E-11208264IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-19210263IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTVEVRKTNL VGENDDMEQF PIGMRVLAVD DDPICLKVLE NLLRKCQYHV TTTNQAVQAL  60
KMLRENKNRF DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSNTEL VKKGVIHGAC  120
DYLLKPVRIE ELKNIWQHVL RRKKPSVKNQ NKSINGNNTS QGVEVAKGCP PAVSTDNEKS  180
GKRQKDQDDD EEGGEEDSTY ENDDSSTQKK PRVNWYDGDE NLHRKFVAAV NILGYEKAVP  240
KKILDLMNVE GLTRENVASH LQALIILLPF VIISLALHFK LPRVTY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-18206268160ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457369.10.0PREDICTED: two-component response regulator ARR12-like
SwissprotA2X1N21e-104ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-104ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A1S3C6130.0A0A1S3C613_CUCME; two-component response regulator ARR12-like
STRINGXP_008457369.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1744167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.16e-99response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]