PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C004378P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 435aa MW: 46926.9 Da PI: 6.8566

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C004378P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.4	5e-16	233	291	3	61
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L eN++L k+l +++++ + MELO3C004378P1 233 DVKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRLENSTLLKRLADISQKYNEANV 291 68*********************************************999999887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.0E-12	230	287	No hit	No description
SMART	SM00338	1.5E-19	231	295	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.576	233	288	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.6E-13	234	287	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.89E-11	235	285	No hit	No description
CDD	cd14702	2.64E-6	236	287	No hit	No description
PROSITE pattern	PS00036	0	238	253	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	8.7E-37	302	427	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MDRMFSVGEI SDQYWSSELA AATPSSRPPP PADEGSKMNR SASEWAFQRF LQEASETSPH 60 SSAADHGEGE VIEIKDSSFN QLQKLNTNHD GVSNCNSTSI SSNAVPPNIP IDSEEYQAFL 120 KSKLHLACAA VAMKRGSFRM TPASSTSADC GSQASNTLGI QAPKASNIGA GNNSLRSPDK 180 DINGAAGVTS SSVVPKISEV RARPVTSGSS RDLSDDEEIE GETEINESKD PADVKRVRRM 240 LSNRESARRS RRRKQAHLTE LETQVAQLRL ENSTLLKRLA DISQKYNEAN VDNRVLKANV 300 ETLRAKVKMA EETVKRVTGN PMFHAMSEIS SIGISSLDGS QSDTSTDAAV PLHDDPCRHL 360 YQSTPNNPVG PHDIVVNNRL PNISQVGNGQ QNSPSQVPPA MSGNKTGRSE SLQRVASLEH 420 LQKRICGVKA NAEQ*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MDRMFSVGEI SDQYWSSELA AATPSSRPPP PADEGSKMNR SASEWAFQRF LQEASETSPH  60
SSAADHGEGE VIEIKDSSFN QLQKLNTNHD GVSNCNSTSI SSNAVPPNIP IDSEEYQAFL  120
KSKLHLACAA VAMKRGSFRM TPASSTSADC GSQASNTLGI QAPKASNIGA GNNSLRSPDK  180
DINGAAGVTS SSVVPKISEV RARPVTSGSS RDLSDDEEIE GETEINESKD PADVKRVRRM  240
LSNRESARRS RRRKQAHLTE LETQVAQLRL ENSTLLKRLA DISQKYNEAN VDNRVLKANV  300
ETLRAKVKMA EETVKRVTGN PMFHAMSEIS SIGISSLDGS QSDTSTDAAV PLHDDPCRHL  360
YQSTPNNPVG PHDIVVNNRL PNISQVGNGQ QNSPSQVPPA MSGNKTGRSE SLQRVASLEH  420
LQKRICGVKA NAEQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	254	RRSRRRKQ
2	249	254	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	0.0	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008455950.1	0.0	PREDICTED: light-inducible protein CPRF2-like
Swissprot	Q99090	1e-103	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A1S3C277	0.0	A0A1S3C277_CUCME; light-inducible protein CPRF2-like
STRING	XP_008455950.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4176	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	6e-70	bZIP family protein

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]