PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004181P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TALE
Protein Properties Length: 322aa    MW: 36792.7 Da    PI: 4.8343
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004181P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-092502842155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yp++ee+ +L+  +gL+++q+ +WF N+R ++
  MELO3C004181P1 250 KWPYPTEEEKSKLSITTGLDQKQINNWFINQRKRH 284
                     569*****************************885 PP

2ELK34.83.7e-12204225122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     +LK++Ll+KYsgyL+sLk+EF+
  MELO3C004181P1 204 DLKEMLLKKYSGYLSSLKKEFL 225
                     6********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-2158102IPR005540KNOX1
PfamPF037904.3E-2160101IPR005540KNOX1
SMARTSM012561.8E-21105156IPR005541KNOX2
PfamPF037918.3E-21109155IPR005541KNOX2
PROSITE profilePS5121310.947204224IPR005539ELK domain
PfamPF037892.6E-9204225IPR005539ELK domain
SMARTSM011885.9E-6204225IPR005539ELK domain
PROSITE profilePS5007112.438224287IPR001356Homeobox domain
SMARTSM003891.8E-11226291IPR001356Homeobox domain
SuperFamilySSF466892.65E-18226296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-25229287IPR009057Homeodomain-like
CDDcd000861.83E-12236287No hitNo description
PfamPF059208.3E-17244283IPR008422Homeobox KN domain
PROSITE patternPS000270262285IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEEFYRLNNP VITSYSNGVV GSEAIASTSC GEIHEALMVD DDMLQLEAEV TTGLNMSDMI  60
KTQIVNHPLY PKLVSAYIEC QKVGAPPQVA SLLEEIGREN HPSRSSIELG ADPQLDNFME  120
SYCEVLHQYK NELSKPFDEA TMFLTNIELE LSNLCKGSFT MMLDSRSAMN DEVSGTPEEE  180
PSSYEEVEMP RNHEPFCTRK TNQDLKEMLL KKYSGYLSSL KKEFLKKRKK EKLPKDARMA  240
LLDWWNTHYK WPYPTEEEKS KLSITTGLDQ KQINNWFINQ RKRHWKPPED MRFVLMDGVG  300
AGECMKGSNF YDNGETGSHV I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219228LKKEFLKKRK
2225229KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818471e-140LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132591e-140LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453416.10.0PREDICTED: homeobox protein knotted-1-like 1 isoform X1
SwissprotQ9FP294e-91KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A1S3BVM40.0A0A1S3BVM4_CUCME; homeobox protein knotted-1-like 1 isoform X1
STRINGXP_008453416.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.13e-71KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]