PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C004181P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TALE | ||||||||
Protein Properties | Length: 322aa MW: 36792.7 Da PI: 4.8343 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 250 | 284 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++ee+ +L+ +gL+++q+ +WF N+R ++ MELO3C004181P1 250 KWPYPTEEEKSKLSITTGLDQKQINNWFINQRKRH 284 569*****************************885 PP | |||||||
2 | ELK | 34.8 | 3.7e-12 | 204 | 225 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++Ll+KYsgyL+sLk+EF+ MELO3C004181P1 204 DLKEMLLKKYSGYLSSLKKEFL 225 6********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.1E-21 | 58 | 102 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.3E-21 | 60 | 101 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.8E-21 | 105 | 156 | IPR005541 | KNOX2 |
Pfam | PF03791 | 8.3E-21 | 109 | 155 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 10.947 | 204 | 224 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.6E-9 | 204 | 225 | IPR005539 | ELK domain |
SMART | SM01188 | 5.9E-6 | 204 | 225 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.438 | 224 | 287 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-11 | 226 | 291 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.65E-18 | 226 | 296 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 229 | 287 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.83E-12 | 236 | 287 | No hit | No description |
Pfam | PF05920 | 8.3E-17 | 244 | 283 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 262 | 285 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEEFYRLNNP VITSYSNGVV GSEAIASTSC GEIHEALMVD DDMLQLEAEV TTGLNMSDMI 60 KTQIVNHPLY PKLVSAYIEC QKVGAPPQVA SLLEEIGREN HPSRSSIELG ADPQLDNFME 120 SYCEVLHQYK NELSKPFDEA TMFLTNIELE LSNLCKGSFT MMLDSRSAMN DEVSGTPEEE 180 PSSYEEVEMP RNHEPFCTRK TNQDLKEMLL KKYSGYLSSL KKEFLKKRKK EKLPKDARMA 240 LLDWWNTHYK WPYPTEEEKS KLSITTGLDQ KQINNWFINQ RKRHWKPPED MRFVLMDGVG 300 AGECMKGSNF YDNGETGSHV I* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 219 | 228 | LKKEFLKKRK |
2 | 225 | 229 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 1e-140 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 1e-140 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453416.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 1 isoform X1 | ||||
Swissprot | Q9FP29 | 4e-91 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A1S3BVM4 | 0.0 | A0A1S3BVM4_CUCME; homeobox protein knotted-1-like 1 isoform X1 | ||||
STRING | XP_008453416.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF620 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70510.1 | 3e-71 | KNOTTED-like from Arabidopsis thaliana 2 |
Publications ? help Back to Top | |||
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