PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004148P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 705aa    MW: 75426.2 Da    PI: 6.4699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004148P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16476522455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  MELO3C004148P2 476 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 522
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.25E-16468525No hitNo description
SuperFamilySSF474592.62E-19469535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-19476528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-13476522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-17478527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MPLSELYRVA RGKLDSTQDK NNMVASDLSM NPENDVFELV WENGQILLQG QSNRTRKNSN  60
LNTSQAQCLP THSPRDRDRD VGYFNNAKMG KFGAIDSVVR DVMSTAPSPD VELAHDDDDD  120
MVPWLSYPLD GHLQHDYSSD FLPELSGVTV NDFPSRNSIA SSIGKASGGN QVNRERDMHL  180
NSMHGANLED GNISKLSSLD VSAARARSST NQLHSSASQQ SQTSFPHLRT KCAGGTENTT  240
GKILHDSLVG HSPQVPLIAS SSSSTARQKL DPTPPNNASN IINFSHFLRP AALLKSNPQN  300
HGVPGTGGSR NLDSMVKNSS AANSQPRESS LIAIQGGIRN ESNSGCKNAV VPSIDGKNPS  360
DAKPPEQSQA NKQPEAACLG DSADHDDRLK HCLEVGATKG YADSEKAVES VIAASLCSRN  420
SVEGASDDPP LNRKRKCHDT EDSEWHSDDV EEDCNDVKRV TSGRGTGSKR SRAAEVHNLS  480
ERRRRDRINE KMRALQELIP NCNKVDKASM LDEAIEYLKT LQLQIMSMGA GLFMPPMMFP  540
GAMPPMNTPH IYPPMGVGMG FGIGMPDMNG GIPMVPVPHM QGMHFPGPSM PAQTVMHGLP  600
SSNFQVLGLP GQGLPMPMPR GPVAPFSGGP FVTNSSMAVA PVDNFGSTAA CSSKDTSPNI  660
NSPMVPNGGT DPSMTPALRQ ANEQASCVNA SSVKPTSKND LIAN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1480485ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453043.10.0PREDICTED: transcription factor PIF3 isoform X1
TrEMBLA0A1S3BWE90.0A0A1S3BWE9_CUCME; transcription factor PIF3 isoform X1
STRINGXP_008453043.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-56phytochrome interacting factor 3