PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003968P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 245aa    MW: 27669.4 Da    PI: 9.1249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003968P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.87.9e-135496754
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      Er+RR+++N+++  Lr ++P+      +K++Ka+i + A+eYI++L
  MELO3C003968P1 54 LSERNRRKKLNDRLLALRAVVPNI-----TKMDKASIIKDAIEYIQEL 96
                    57*********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.194796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-1150100No hitNo description
SuperFamilySSF474591.44E-1652111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-1653111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-1453102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-105496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSIAITGKPI CFSRRKNSTD RNFSWGLDEA FYGSYDSSSP DGTMSSLEAS KNILSERNRR  60
KKLNDRLLAL RAVVPNITKM DKASIIKDAI EYIQELRSEE NRIETEISNL ESGKFKSTTS  120
NEDDDRENNN RNTRKRGTKN SNRQLREKPT SFPIEILDLN VSYMGEKTMV VSMTCERRND  180
AVLKICQVIE SLKLKIITAN ITVVANRLLS TLFLEAERAE EEELKIKLGK AIAAISDQQN  240
PISI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1444106163Transcription factor MYC2
5gnj_B5e-1444106163Transcription factor MYC2
5gnj_E5e-1444106163Transcription factor MYC2
5gnj_F5e-1444106163Transcription factor MYC2
5gnj_G5e-1444106163Transcription factor MYC2
5gnj_I5e-1444106163Transcription factor MYC2
5gnj_M5e-1444106163Transcription factor MYC2
5gnj_N5e-1444106163Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818471e-129LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132591e-129LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451140.11e-177PREDICTED: transcription factor bHLH35-like isoform X3
SwissprotQ2HIV96e-69BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3BQT91e-175A0A1S3BQT9_CUCME; transcription factor bHLH35-like isoform X3
STRINGXP_008451126.11e-160(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-49bHLH family protein