PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C003797P3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 144aa MW: 15285.4 Da PI: 9.8935 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17 | 1.1e-05 | 28 | 66 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq MELO3C003797P3 28 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 66 7788999*********998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.299 | 16 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.70E-6 | 26 | 70 | No hit | No description |
SuperFamily | SSF47459 | 1.27E-11 | 26 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.7E-10 | 30 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MESRLNQQSP LKKSRLDSRA SCPPFKVRKE KLGDRIAALQ QLVAPFGKTD TASVLMEAIG 60 YIKFLQNQVE TLSVPYMKPA GSNKAPQPTH RSSVEDGNEG GQNRDLRSRG LCLVPLGCLS 120 YVTGDGGGGV GIWPPPGFNG GTS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681824 | 1e-83 | LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596. | |||
GenBank | LN713258 | 1e-83 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466525.1 | 1e-99 | PREDICTED: transcription factor bHLH110-like isoform X1 | ||||
Refseq | XP_008466527.1 | 1e-100 | PREDICTED: transcription factor bHLH110-like isoform X3 | ||||
Swissprot | Q9SFZ3 | 1e-49 | BH110_ARATH; Transcription factor bHLH110 | ||||
TrEMBL | A0A1S3CRG7 | 1e-98 | A0A1S3CRG7_CUCME; transcription factor bHLH110-like isoform X3 | ||||
TrEMBL | A0A1S3CSR9 | 3e-98 | A0A1S3CSR9_CUCME; transcription factor bHLH110-like isoform X1 | ||||
STRING | XP_008466525.1 | 5e-99 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 6e-49 | bHLH family protein |
Publications ? help Back to Top | |||
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