PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003797P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 459aa    MW: 49731.1 Da    PI: 7.3128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003797P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.6e-053453831255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  MELO3C003797P2 345 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 383
                     7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.299333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-9343386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.48E-5343385No hitNo description
Gene3DG3DSA:4.10.280.102.0E-7347385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MESTANLNHH QHQLQDHQLL LASSSSSSSL SVVPSYFGLG TAWSSNISLN SNNTCNVYNN  60
PTIFNGEVTT TNSSHPIRSS DCEQKNTNST SSIMLQDLGN YDQWNNNNGD NVVNTGNNNF  120
FTQSLHHNQQ QISSSTPPTT PPPPPPPPHQ SFPKFTEILN NNNITNIQDF ININSNNDSD  180
LNDLTHKLLI KTLISSGCQI NGADHPIISR SSNNNRPAPH FPQIYPSINV SNWNISSPSP  240
PPPSFSNSLD LNLQTPTDML VGNFSQNNFG IFKEALSDFG DQIRESPPTG SLPCIIPSKM  300
TTFSSTEVCK PKRGCNSMES RLNQQSPLKK SRLDSRASCP PFKVRKEKLG DRIAALQQLV  360
APFGKTDTAS VLMEAIGYIK FLQNQTLSVP YMKPAGSNKA PQPTHRSSVE DGNEGGQNRD  420
LRSRGLCLVP LGCLSYVTGD GGGGVGIWPP PGFNGGTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466526.10.0PREDICTED: transcription factor bHLH110-like isoform X2
TrEMBLA0A1S3CRI30.0A0A1S3CRI3_CUCME; transcription factor bHLH110-like isoform X2
STRINGXP_008466525.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-42bHLH family protein