PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003778P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 271aa    MW: 31675.1 Da    PI: 10.2126
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003778P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.6e-293585151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgkl+ey+s
  MELO3C003778P1 35 KRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYIS 85
                    79***********************************************86 PP
2K-box942.5e-3197195199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk+ g++l+ +++e++q +l+kLk+ ++nL+r++R+++Ge++++Ls++eL+ Leq+++++++ iR++K++++ +qie+ +kk k++ e++k+L 
  MELO3C003778P1  97 YQKTLGVDLWISHYERMQDNLKKLKDINRNLRRQIRQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLL 191
                     7899999***************************************************************************************9 PP

           K-box  96 kkle 99 
                     ++++
  MELO3C003778P1 192 QEFD 195
                     9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-412786IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.0852787IPR002100Transcription factor, MADS-box
CDDcd002654.70E-3928106No hitNo description
PROSITE patternPS0035002983IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-3629121IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-292949IPR002100Transcription factor, MADS-box
PfamPF003191.6E-253683IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-294964IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-296485IPR002100Transcription factor, MADS-box
PfamPF014861.7E-21108194IPR002487Transcription factor, K-box
PROSITE profilePS5129715.741110200IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MYVYFSHKQQ QQQQQERRRR RRKSKNMARG KIQIKRIENP TNRQVTYSKR RNGLFKKANE  60
LTVLCDAKVS IIMFSSTGKL HEYISPATST KELFDQYQKT LGVDLWISHY ERMQDNLKKL  120
KDINRNLRRQ IRQRMGECMN DLSFEELRCL EQDMDNAVRI IRERKYRVIS NQIETHKKKL  180
KSVGEIHKSL LQEFDIATEE DPHYGLVDNG GVGVGIGGGD YESIMGFSGA AHPRIFALRL  240
QPNHNHNNHL NNIHLHNPPP SDLTTYPFLE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-162786160MEF2C
5f28_B9e-162786160MEF2C
5f28_C9e-162786160MEF2C
5f28_D9e-162786160MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11621RRRRRR
21622RRRRRRK
31924RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9440600.0AY944060.1 Cucumis sativus MADS box protein (MADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466510.10.0PREDICTED: floral homeotic protein DEFICIENS isoform X1
SwissprotE0CPH41e-110AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLA0A1S3CSQ50.0A0A1S3CSQ5_CUCME; floral homeotic protein DEFICIENS isoform X1
STRINGXP_008466510.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.19e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]