PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C003554P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 25281.3 Da PI: 7.5941 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.1e-18 | 63 | 115 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ +q++ Le++Fe ++++ +++ ++A++l+L+ rqV++WFqNrRa++k MELO3C003554P1 63 KRRLKLDQVKGLERHFEVENKLEPDRKMKIAAELELEPRQVTIWFQNRRARWK 115 4478889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.7 | 1.5e-38 | 61 | 153 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+krrl+ +qvk LE++Fe e+kLep+rK+++a eL+l+prqv +WFqnrRAR+ktkqlEkdy +Lk +ydalk + + Leke+++L++++ke MELO3C003554P1 61 ERKRRLKLDQVKGLERHFEVENKLEPDRKMKIAAELELEPRQVTIWFQNRRARWKTKQLEKDYGVLKLNYDALKLDYDVLEKENASLASKVKE 153 69***************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 45 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.56E-18 | 49 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.147 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-16 | 60 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.86E-13 | 62 | 118 | No hit | No description |
Pfam | PF00046 | 2.6E-15 | 63 | 115 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.0E-15 | 117 | 158 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MKRFSHSDSL DSFISFFSPK DQQPNSKAIG GYSKEFQAML DSLEEEDNSE DGGSSGGSAP 60 ERKRRLKLDQ VKGLERHFEV ENKLEPDRKM KIAAELELEP RQVTIWFQNR RARWKTKQLE 120 KDYGVLKLNY DALKLDYDVL EKENASLASK VKELREKVNR AMKKGSMERD DSNRDGNNSY 180 ISMLKNNNNQ IQFTKAMNED QSLVNFCSVD QAPSLHYW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 65 | ERKRRL |
2 | 109 | 117 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681824 | 0.0 | LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466655.1 | 1e-161 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Swissprot | P46667 | 6e-46 | ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5 | ||||
TrEMBL | A0A1S3CRT3 | 1e-159 | A0A1S3CRT3_CUCME; homeobox-leucine zipper protein ATHB-6-like | ||||
STRING | XP_008466655.1 | 1e-160 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1868 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.1 | 2e-42 | homeobox protein 5 |
Publications ? help Back to Top | |||
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