PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003375P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 528aa    MW: 59348.3 Da    PI: 6.0376
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003375P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like871.9e-27286338255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     ++++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++++SHLQkYR+
  MELO3C003375P3 286 TKVDWTPELHRKFVQAVEQL-GIDHAIPSKILELMKVEGLTRHNIASHLQKYRM 338
                     5899****************.********************************8 PP
2Response_reg27.21.9e-10201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d +   +  +r+ le+ +y +v +++d +eal  + +    +++ +l +   + d  e++k + +++ +lpii+ ++    +++ +++ +G
  MELO3C003375P3  20 VLLLDRDSCSATEIRSKLEEMEY-VVYSCTDEKEALSAILNTPgnFHVAILEVCARNYD--EIFKLLGASK-DLPIIMTSDVHCLSTMMKCIALG 110
                     56667777777889999******.***************777767*******9999988..9999997766.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl Kp ++++l++
  MELO3C003375P3 111 AVEFLLKPLSEDKLRN 126
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.9E-1716147No hitNo description
SuperFamilySSF521722.13E-1616137IPR011006CheY-like superfamily
PROSITE profilePS5011023.20919132IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.5E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.49E-1021132No hitNo description
PROSITE profilePS5129414.436282341IPR017930Myb domain
SuperFamilySSF466892.24E-18284342IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-26286341IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-25287339IPR006447Myb domain, plants
PfamPF002495.5E-8288337IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MVCTADDLQE WKDFPKGLRV LLLDRDSCSA TEIRSKLEEM EYVVYSCTDE KEALSAILNT  60
PGNFHVAILE VCARNYDEIF KLLGASKDLP IIMTSDVHCL STMMKCIALG AVEFLLKPLS  120
EDKLRNIWQH VIHKAYSNTS KPGEESVASL MQLQLENEDK NGVPEDMEIL SWIQDIVWEQ  180
PEGSDDKSQL NLGASRQGSW ESGDQMNCSM ETDCKDKDVQ SKFVETTSHD LVCEGPIQEG  240
QPQLSDKKKF GVESDPLAAE NSIQGTGVNQ SAGSKAKKTK VKLSDTKVDW TPELHRKFVQ  300
AVEQLGIDHA IPSKILELMK VEGLTRHNIA SHLQKYRMQK KHVMQREENT RWSHYPRSTL  360
QTNHLKPIMA YPSYHPNCGI SVSAVYPTWR QTNDRPPNIH VCGPFGYRHW PQPGIQPWNS  420
YARVQADTWG CPVMPPSHAP YFSYPQLVSA SQHNMHTVNK SYGMPQGLFD LQPDEEVVDK  480
IVKEAMREPW SPLPLGLKPP STESVLTELS KQGISTVPPQ IDGSRSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16290341657Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1792040.0KU179204.1 Cucumis sativus cultivar W33 two-component response regulator-like protein APRR2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465932.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
TrEMBLA0A1S3CQ070.0A0A1S3CQ07_CUCME; two-component response regulator-like APRR2 isoform X2
STRINGXP_008465931.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-109ARR-B family protein