PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003375P2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 521aa    MW: 58576.4 Da    PI: 5.9281
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003375P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.81.1e-27278331155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++++SHLQkYR+
  MELO3C003375P2 278 KTKVDWTPELHRKFVQAVEQL-GIDHAIPSKILELMKVEGLTRHNIASHLQKYRM 331
                     6799*****************.********************************8 PP

2Response_reg27.31.9e-10201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d +   +  +r+ le+ +y +v +++d +eal  + +    +++ +l +   + d  e++k + +++ +lpii+ ++    +++ +++ +G
  MELO3C003375P2  20 VLLLDRDSCSATEIRSKLEEMEY-VVYSCTDEKEALSAILNTPgnFHVAILEVCARNYD--EIFKLLGASK-DLPIIMTSDVHCLSTMMKCIALG 110
                     56667777777889999******.***************777767*******9999988..9999997766.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl Kp ++++l++
  MELO3C003375P2 111 AVEFLLKPLSEDKLRN 126
                     *************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-1616143No hitNo description
SuperFamilySSF521722.13E-1616137IPR011006CheY-like superfamily
PROSITE profilePS5011023.20919132IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.3E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.35E-1021132No hitNo description
PROSITE profilePS5129416.812275334IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-27276334IPR009057Homeodomain-like
SuperFamilySSF466895.82E-19277335IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-25278332IPR006447Myb domain, plants
PfamPF002495.4E-8281330IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MVCTADDLQE WKDFPKGLRV LLLDRDSCSA TEIRSKLEEM EYVVYSCTDE KEALSAILNT  60
PGNFHVAILE VCARNYDEIF KLLGASKDLP IIMTSDVHCL STMMKCIALG AVEFLLKPLS  120
EDKLRNIWQH VIHKAYSNTS KPGEESVASL MQLQLENEDK NGVPEDMEIL SWIQDIVWEQ  180
PEGSDDKSQL NLGASRQGSW ESGDQMNCSM ETDCKDKDVQ SKFVETTSHD LVCEGPIQEG  240
QPQLSDKKKF GVESDPLAAE NSIQGTGVNQ SAGSKAKKTK VDWTPELHRK FVQAVEQLGI  300
DHAIPSKILE LMKVEGLTRH NIASHLQKYR MQKKHVMQRE ENTRWSHYPR STLQTNHLKP  360
IMAYPSYHPN CGISVSAVYP TWRQTNDRPP NIHVCGPFGY RHWPQPGIQP WNSYARVQAD  420
TWGCPVMPPS HAPYFSYPQL VSASQHNMHT VNKSYGMPQG LFDLQPDEEV VDKIVKEAMR  480
EPWSPLPLGL KPPSTESVLT ELSKQGISTV PPQIDGSRSP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16277336463ARR10-B
5lxu_A1e-16278334157Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1792030.0KU179203.1 Cucumis sativus cultivar Q30 two-component response regulator-like protein APRR2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465934.10.0PREDICTED: two-component response regulator-like APRR2 isoform X4
TrEMBLA0A1S3CRG60.0A0A1S3CRG6_CUCME; two-component response regulator-like APRR2 isoform X4
STRINGXP_008465931.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-110ARR-B family protein