PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C003375P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARR-B | ||||||||
Protein Properties | Length: 457aa MW: 51912.9 Da PI: 5.9682 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88 | 8.8e-28 | 278 | 331 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k++++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++++SHLQkYR+ MELO3C003375P1 278 KTKVDWTPELHRKFVQAVEQL-GIDHAIPSKILELMKVEGLTRHNIASHLQKYRM 331 6799*****************.********************************8 PP | |||||||
2 | Response_reg | 27.6 | 1.5e-10 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d + + +r+ le+ +y +v +++d +eal + + +++ +l + + d e++k + +++ +lpii+ ++ +++ +++ +G MELO3C003375P1 20 VLLLDRDSCSATEIRSKLEEMEY-VVYSCTDEKEALSAILNTPgnFHVAILEVCARNYD--EIFKLLGASK-DLPIIMTSDVHCLSTMMKCIALG 110 56667777777889999******.***************777767*******9999988..9999997766.8********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp ++++l++ MELO3C003375P1 111 AVEFLLKPLSEDKLRN 126 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 7.9E-17 | 16 | 143 | No hit | No description |
SuperFamily | SSF52172 | 1.71E-16 | 16 | 137 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS50110 | 23.209 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 6.6E-7 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.99E-10 | 21 | 132 | No hit | No description |
PROSITE profile | PS51294 | 16.812 | 275 | 334 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-27 | 276 | 334 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.75E-19 | 277 | 335 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-25 | 278 | 332 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-8 | 281 | 330 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MVCTADDLQE WKDFPKGLRV LLLDRDSCSA TEIRSKLEEM EYVVYSCTDE KEALSAILNT 60 PGNFHVAILE VCARNYDEIF KLLGASKDLP IIMTSDVHCL STMMKCIALG AVEFLLKPLS 120 EDKLRNIWQH VIHKAYSNTS KPGEESVASL MQLQLENEDK NGVPEDMEIL SWIQDIVWEQ 180 PEGSDDKSQL NLGASRQGSW ESGDQMNCSM ETDCKDKDVQ SKFVETTSHD LVCEGPIQEG 240 QPQLSDKKKF GVESDPLAAE NSIQGTGVNQ SAGSKAKKTK VDWTPELHRK FVQAVEQLGI 300 DHAIPSKILE LMKVEGLTRH NIASHLQKYR MQKKHVMQRE ENTRWSHYPR STLQTNHLKP 360 IMAYPSYHPN CGISVSAVYP TWRQTNDRPP NIHVCGPFGY RHWPQPGIQP WNSYARVQAD 420 TWGCPVMPPS HAPYFSYPQV RNMDFFFLFS FYLEVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-16 | 277 | 336 | 4 | 63 | ARR10-B |
5lxu_A | 7e-17 | 278 | 334 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU179203 | 0.0 | KU179203.1 Cucumis sativus cultivar Q30 two-component response regulator-like protein APRR2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008465934.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X4 | ||||
TrEMBL | A0A1S3CRG6 | 0.0 | A0A1S3CRG6_CUCME; two-component response regulator-like APRR2 isoform X4 | ||||
STRING | XP_008465931.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.5 | 1e-101 | ARR-B family protein |