PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003208P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CAMTA
Protein Properties Length: 977aa    MW: 108774 Da    PI: 7.7955
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003208P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.43.8e-55201363118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e +krwl++ ei++iL n++k++l+ +++ +p+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+v+vl+cyYah+e+n++fqr
  MELO3C003208P1  20 QEaQKRWLRPAEICEILRNYKKFQLAPDPPVQPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNENFQR 114
                     5559******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     r+yw+L+ +le+ivlvhy+evk
  MELO3C003208P1 115 RSYWMLDGQLEHIVLVHYREVK 136
                     *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.37815141IPR005559CG-1 DNA-binding domain
SMARTSM010762.1E-7718136IPR005559CG-1 DNA-binding domain
PfamPF038594.0E-4921134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:1.25.40.207.6E-1793108IPR020683Ankyrin repeat-containing domain
CDDcd001021.49E-4403492No hitNo description
Gene3DG3DSA:2.60.40.105.6E-6404496IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.1E-15404491IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.207.6E-17598701IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.24E-16599699IPR020683Ankyrin repeat-containing domain
CDDcd002041.91E-14599696No hitNo description
PROSITE profilePS5029718.139604698IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-6609700IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0031637666IPR002110Ankyrin repeat
PROSITE profilePS5008810.9637669IPR002110Ankyrin repeat
SMARTSM00248500676705IPR002110Ankyrin repeat
SuperFamilySSF525404.51E-9805860IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.067809831IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.48810839IPR000048IQ motif, EF-hand binding site
PfamPF006120.0096812830IPR000048IQ motif, EF-hand binding site
SMARTSM000152.7E-4832854IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.816833861IPR000048IQ motif, EF-hand binding site
PfamPF006125.0E-5836854IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.595917945IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 977 aa     Download sequence    Send to blast
MADNRRYVPI QQLDLVQILQ EAQKRWLRPA EICEILRNYK KFQLAPDPPV QPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML  120
DGQLEHIVLV HYREVKEGCK SGMSRVSVDP GLQAEGCQGV STPFFLQEPS LVGSVHASCP  180
FNLSQTVPSG NGGMDSSLVG SVHASCPFNL SQTVPSGNGG MDSSGRNKSG VTSHVHQVFK  240
SSIPPASFPK GDVSGSSDLC GQEIVIIQSA TTDSITHKPT DARFDSSGLV ENMVNSESGL  300
IADSKVPAVK AVSQRFVQIE KTTHDNLDLE GLGELRKLDS FGRWMDKEIG RDCNDSLMTL  360
DSRSYWCGLD AGNDEKEDSS LSHHMQLDVN SLEPSLSQEQ LFSIFDFSPD WTYSGNVTKV  420
LVVGSFLGSN KLPVETQWGC MFGEVEVSAE VLTNNVLRCR TPPLHAPGRI PFYVTCCNRL  480
ACSEVREFEY REKPPTLSVP NATKCAPEDE LWFQMRLIRL LNLGSEENLL KCSIEKCEKC  540
QIIGLINSSR SDVAKWTMTE GSLKSDGMNH RDYMIQSLLE DKLCKWLAYK VHDGTMGTHV  600
LDDEGLGVIH LAAALGYAWA IGSIIASGLS PNFRDSNGRT ALHWASYFGR EETVTTLVSL  660
GVSPGAVDDP TSGFPRGQTA ADLASSRGHK GIAGYLAEAD LKAHSCTLTD GENFKDNIKE  720
NANIDEAIET VDVVPSQLAE DELLSLKGSL AAVRKSVNAA ALIHAAFRAR SFRHKQLMGS  780
DKGMIHEDSP DLVALGILNK AEKIHYEDYL HVAAVRIQQN YRGWKGRREF LKIRNRIVKI  840
QAHVRGHQVR KEYRKVIWSV SIVEKAILRW RRKRVGLRGF KAEGAMGEVV TPHPKMDKSD  900
EYEFLRIGRQ LKYADVEKAL SRVKSMARSP EARRQYMRLV ANFNKFKIND EETSSSNQGG  960
SSQEIHKEKH MHSFAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818880.0LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448822.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X2
TrEMBLA0A1S3BKL30.0A0A1S3BKL3_CUCME; calmodulin-binding transcription activator 3-like isoform X2
STRINGXP_008448813.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1