PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003140P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 281aa    MW: 31183.7 Da    PI: 6.6241
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003140P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.4e-32127183258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     dDgy+WrKYGqK++k+s++prsYYrC+ ++C++kk+vers edp++++itYeg H h
  MELO3C003140P1 127 DDGYKWRKYGQKSIKNSPNPRSYYRCSNPRCSAKKQVERSIEDPDTFIITYEGLHLH 183
                     8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.934121186IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-29121183IPR003657WRKY domain
SuperFamilySSF1182908.11E-27124183IPR003657WRKY domain
SMARTSM007746.8E-36126185IPR003657WRKY domain
PfamPF031061.2E-25127183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDSLAAIPWS DSYTTVSSDD HLFTLTNLLH DDDNHDSSPL FLLPQDNADD NNRSIRLPVP  60
GGATYFGPTI EDIENALSIG TPRSKDLHSH AHISHTGFSI VERGSLNKVE HKYSLRIKSC  120
GGNMVADDGY KWRKYGQKSI KNSPNPRSYY RCSNPRCSAK KQVERSIEDP DTFIITYEGL  180
HLHFAYPFFL MGQNPQPQSP TKKPKTIDPE PEAHEKPPFL DPIESTGTQG LLEDMVPWLI  240
RNPSTHHNAL SNSSSCLSHR SPPPTPPSPS TSPSFTTSCF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-201251831371WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818880.0LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448088.10.0PREDICTED: probable WRKY transcription factor 49
TrEMBLA0A1S3BIB60.0A0A1S3BIB6_CUCME; probable WRKY transcription factor 49
STRINGXP_008448088.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-48WRKY DNA-binding protein 49