PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C003121P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 290aa MW: 31804.2 Da PI: 9.7616

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C003121P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.5	5.2e-37	68	126	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg r+n+k+ MELO3C003121P1 68 ETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKR 126 6789************************************************9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-33	51	119	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-31	70	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	71	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	73	109	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MVFPSIPSNY LDPTTHQWQQ QTATNHQSGS GTMIGGSSFQ LAPSPPPSQV RPGSMADRAR 60 MANLPVPETA LKCPRCESTN TKFCYFNNYS LSQPRHFCKT CRRYWTRGGA LRSVPVGGGY 120 RRNNKRTKSS SKSPVNSQCQ PTTTEPSAGE AMRLNYNNAI STPNEGAVDS THHHHHHHHP 180 IGISNFLGFD QIQWRPQLQL HQTTQPSSLV ANSARLLGNG GINSSLSYSI VGEIQKKMDA 240 TTTKMEEDGQ QVAEVNNVGK PFWGVVGGND NRHYWNGFNP SSSSSHSQV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681888	0.0	LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008447721.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBL	A0A1S3BI28	0.0	A0A1S3BI28_CUCME; dof zinc finger protein DOF5.1-like
STRING	XP_008447721.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24775	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	2e-43	OBF-binding protein 3