PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003002P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family RAV
Protein Properties Length: 322aa    MW: 35931.6 Da    PI: 10.0138
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003002P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.57e-134391155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++kGV   + +grW A+I++      ++r++lg+f  +++Aaka++ a+++++g
  MELO3C003002P1 43 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENDAAKAYDIAALRFRG 91
                    689***9788.8*********3.....5*************************98 PP
2B398.73.6e-31172270194
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+ tpsdv+k++rlv+pk++ae++     g ++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+n L++gD+v F ++   ++
  MELO3C003002P1 172 FEKTVTPSDVGKLNRLVIPKQHAEKNfpmeeGVVSGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDK 266
                     99*************************9999888889**************************************************97755666 PP

                     ..EE CS
              B3  91 elvv 94 
                     +l++
  MELO3C003002P1 267 QLYI 270
                     5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-1643100IPR016177DNA-binding domain
CDDcd000182.15E-2543101No hitNo description
PfamPF008472.5E-74391IPR001471AP2/ERF domain
PROSITE profilePS5103219.8884499IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-204499IPR001471AP2/ERF domain
SMARTSM003809.1E-3044105IPR001471AP2/ERF domain
PRINTSPR003675.5E-64556IPR001471AP2/ERF domain
PRINTSPR003675.5E-681101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.5E-39165270IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-31170269IPR015300DNA-binding pseudobarrel domain
CDDcd100177.31E-29171271No hitNo description
SMARTSM010191.4E-24172274IPR003340B3 DNA binding domain
PfamPF023624.9E-28172270IPR003340B3 DNA binding domain
PROSITE profilePS5086314.113172274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEASSIDEST ASDSTSISPV TPLLFHSSPS ATAEAESRKL PSSRFKGVVP QPNGRWGAQI  60
YEKHQRVWLG TFNEENDAAK AYDIAALRFR GRDAVTNFKP SLNHDHDHAL EADFLNSHSK  120
LEIVDMLRKH TYNEELQQSK RHQRGAMAVD SGSFPHYSGS GSGSDSKREV LFEKTVTPSD  180
VGKLNRLVIP KQHAEKNFPM EEGVVSGKGM LLNFEDMGGK VWRFRYSYWN SSQSYVLTKG  240
WSRFVKDNTL RAGDVVRFLR STGPDKQLYI HANPINAPGI KPVHVVKLFG VNILQLPVGK  300
TEGAFLELQQ PTKKQRVIKP L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-5216927011112DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818920.0LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465773.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-121RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A1S3CPL60.0A0A1S3CPL6_CUCME; AP2/ERF and B3 domain-containing transcription factor RAV1-like
STRINGXP_008465773.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-124related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]