PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C002875P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 407aa MW: 44010.1 Da PI: 5.5356

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C002875P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.3	2e-30	196	254	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+++p++++itY++eHnh+ MELO3C002875P1 196 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTNPNMLVITYTSEHNHP 254 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-30	187	256	IPR003657	WRKY domain
PROSITE profile	PS50811	32.535	190	256	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-26	193	256	IPR003657	WRKY domain
SMART	SM00774	6.0E-37	195	255	IPR003657	WRKY domain
Pfam	PF03106	1.8E-25	197	254	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MDNNNYQQAG DLTDVIRPTS APVAGHFSSE FSLDSFSGEG RLWSHLPADN SSMNFGDPLS 60 FQTRDPFLLP HFSPFNFASD GGGEGLAADQ PSNLLSHMLQ ISPSSGDGVI STPPCESLAS 120 AVGNSPSSTS VRGGGGVVVP TGGSNPLCLM ENSGIQISSP RNSANKRRKS QVKKVVCIPA 180 PAPANSRSSS GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTNP 240 NMLVITYTSE HNHPWPTQRN ALAGSTRSHP SRTTTTTATN KTSPKQERIN DILPTTMIKE 300 EEIDEDQTTD KAATTTNDNQ EEGDHQDFPF DLIFTEFADQ MNDLEHENDH DHSHHLSADP 360 LNNNMLMFGS HGFSTGNGEG SKDPFLELYD WAENSSGSLF KEAKGG*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MDNNNYQQAG DLTDVIRPTS APVAGHFSSE FSLDSFSGEG RLWSHLPADN SSMNFGDPLS  60
FQTRDPFLLP HFSPFNFASD GGGEGLAADQ PSNLLSHMLQ ISPSSGDGVI STPPCESLAS  120
AVGNSPSSTS VRGGGGVVVP TGGSNPLCLM ENSGIQISSP RNSANKRRKS QVKKVVCIPA  180
PAPANSRSSS GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTNP  240
NMLVITYTSE HNHPWPTQRN ALAGSTRSHP SRTTTTTATN KTSPKQERIN DILPTTMIKE  300
EEIDEDQTTD KAATTTNDNQ EEGDHQDFPF DLIFTEFADQ MNDLEHENDH DHSHHLSADP  360
LNNNMLMFGS HGFSTGNGEG SKDPFLELYD WAENSSGSLF KEAKGG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-25	169	257	2	80	Disease resistance protein RRS1
5w3x_D	2e-25	169	257	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681892	0.0	LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008465657.1	0.0	PREDICTED: probable WRKY transcription factor 14 isoform X1
Swissprot	O64747	3e-64	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A1S3CQV3	0.0	A0A1S3CQV3_CUCME; probable WRKY transcription factor 14 isoform X1
STRING	XP_008465657.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5430	34	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-61	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]