PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002870P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 310aa    MW: 34340.2 Da    PI: 4.2441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002870P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.62e-07185229655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ r RR++i  + +eL el+P        K++ ae+L  A +Y+k Lq
  MELO3C002870P1 185 TIAARERRRKITVKTQELGELVPGG-----SKMNTAEMLNSAFKYVKFLQ 229
                     56789******************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.182179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-11179241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-8182233No hitNo description
Gene3DG3DSA:4.10.280.107.7E-11183244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-5185229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAALTFHSNF YSPDPSSYFH YFSPEFSPDL SYVPPPHLLS DPAAFPYVDD SVFYPAADTL  60
FSDDAFPFLF SDAYPYFSAP SVDEFLPVSS QFFPFDEFEF HCPKRQRAVF EQSFCCGEGV  120
GDGNVGGGGE GAGAGAGFFP PPLAEFFSGP WDSRMDNAEM TNDCLKSQPS PAPPAPSSNN  180
LSAQTIAARE RRRKITVKTQ ELGELVPGGS KMNTAEMLNS AFKYVKFLQA QVAILQLKQE  240
TEQEQEQEQE GQETENLKIL ESTLIQEKLY LEEKCLVPKG FIQNLADFPE IQSHPSIFNS  300
INKILHNNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445817.10.0PREDICTED: transcription factor bHLH52
TrEMBLA0A1S3BEE90.0A0A1S3BEE9_CUCME; transcription factor bHLH52
STRINGXP_008445817.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-25bHLH family protein