PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002807P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92903.1 Da    PI: 6.0302
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002807P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-181876357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+++Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  MELO3C002807P1 18 KYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                    6789*****************************************************97 PP
2START170.51.1e-531663732205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vis+g  g+++l 
  MELO3C002807P1 166 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPM-KVAEILKDRLSWFRDCRCVDVLSVISTGngGTIELL 259
                     68999*****************************************************.8999999999************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+    ss+vRae+lpSg+li+ +++g s +++v+hvdl+ ++++++lr+l+
  MELO3C002807P1 260 YMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPSgppPSSFVRAEMLPSGYLIRACEGG-SLIHIVDHVDLDVWSVPEVLRPLY 353
                     ***************************************99999888899*******************9.************************ PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+ + +++++va+l++ ++
  MELO3C002807P1 354 ESTKILAQRMTVAALRYVRQ 373
                     ***************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5971377IPR001356Homeobox domain
SMARTSM003897.1E-161581IPR001356Homeobox domain
PfamPF000467.1E-161876IPR001356Homeobox domain
SuperFamilySSF466892.22E-161880IPR009057Homeodomain-like
CDDcd000861.57E-161878No hitNo description
Gene3DG3DSA:1.10.10.601.6E-182076IPR009057Homeodomain-like
CDDcd146865.95E-670109No hitNo description
PROSITE profilePS5084825.412156383IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-20164357IPR023393START-like domain
SMARTSM002343.0E-50165374IPR002913START domain
SuperFamilySSF559613.16E-35166376No hitNo description
PfamPF018525.1E-51166373IPR002913START domain
PfamPF086702.8E-50699843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MALVMHRDSL NKQMDTSKYV RYTPEQVDAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQTQVSR LVYENGYMRQ  120
QLHTASGTTT DNSCESVVMS GQQHQQQNPT KHTQKDANNP AGLLAIAEET LAEFLSKATG  180
TAVDWVQMIG MKPGPDSIGI VAVSRNCNGV AARACGLVSL EPMKVAEILK DRLSWFRDCR  240
CVDVLSVIST GNGGTIELLY MQTYAPTTLA AARDFWTLRY TTSLEDGSLV ICERSLTSST  300
GGPSGPPPSS FVRAEMLPSG YLIRACEGGS LIHIVDHVDL DVWSVPEVLR PLYESTKILA  360
QRMTVAALRY VRQIAQEASG EVQLGGGRQP AVLRTFSQRL CRGFNDAVNG FVDDGWSLMD  420
SDGVEDVTVV INSSPNKFLG SQYNTSLYPT FGGVLCAKAS MLLQNVPPAL LVRFLREHRS  480
EWADYGVDAY SAACLKASAY AVPCARPGGF PGGQVILPLA HTVENEEFLE VVRLEGHAMF  540
PEEAALGGRD MYLLQLCSGV EENTVGACAQ LVFAPIDESF ADDAPLLPSG FRVIPLESKT  600
EMPGATRTLD LASTLEVRPG TNRPGGETDV TNYNLRSVLT IAFQFTFENH MRDSVAAMAR  660
QYVQTVVGSV QRVAMAIAPS QLGSQIGPKS LPGSPEALTL AQWITRSYRI HSGAELFQVE  720
SQSGDAILKQ LWHHSDTILC CSVKTNASPV FTFANQAGLD MLETTLVSLQ DITLDKILDD  780
AGRKILCSEF SKIMQQGFAY LPAGICVSSM GRPVSYEQAI AWKVLNDDDV HHCLAFMFVN  840
WSFM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445207.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1S3BC420.0A0A1S3BC42_CUCME; homeobox-leucine zipper protein ATHB-14-like
STRINGXP_008445207.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]