PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002771P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 903aa    MW: 99882.4 Da    PI: 6.3722
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002771P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F   ++++
  MELO3C002771P1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSMQPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFI--WNEK 218
                     99*****************************9445444.38************************************************..8899 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  MELO3C002771P1 219 NQLLLGIRRA 228
                     999****997 PP
2Auxin_resp117.61e-38253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t s F++++nPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  MELO3C002771P1 253 AAHAAATISRFTIFFNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-21126227No hitNo description
PROSITE profilePS5086312.449127229IPR003340B3 DNA binding domain
PfamPF023621.1E-21127228IPR003340B3 DNA binding domain
SMARTSM010191.5E-23127229IPR003340B3 DNA binding domain
PfamPF065076.6E-33253336IPR010525Auxin response factor
SuperFamilySSF542772.49E-7759844No hitNo description
PfamPF023094.5E-7760858IPR033389AUX/IAA domain
PROSITE profilePS5174522.663769853IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MRLSAGGFSP QAPEGERRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAQIPNYPS LPPQLICQLH NLTMHADAET DEVYAQMTLQ PLSAQELKEA YLPAELGTPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSM QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDA VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATI SRFTIFFNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPTG LPSFGIKDSD LGMNSPFMWL RGDNSDRGIQ CLNFQGAGVS  420
PWMQPRLDPS MMGMQSDMYQ VMATAALQEM RAIDYSKISP ASVLQFQQPQ SLPCQSSTLL  480
QPQMLHQSQS QQAFLQSVQE NQQHSQPQSQ SQTQSHHLQP QLQPQQSFNN HSQQHQQQPR  540
QTQPLDHQQI PCSIPAISQF ASCSQSQSPS LQTVPSLCQQ PSFSDSNGNP VTSPAVSPLH  600
SLAGSFVQDD SSQLLNLQRA HSVIPEAGWP SKRAAIDPVC TGASQYFLPQ VEMLGTPQSS  660
ISQNTVALPP FPGRECPIDD REEGSDPQNH VLFGVNIDSS SLLMQNGMSN LRGVGNDSVS  720
TTLPFSSNYM STAGSNFSVN PTMTSSNCID ESGLLQSHEN VGQVNPPNGT FVKVHKSGTY  780
SRSLDITKFN SYPELRSELA RMFGLEGELE DPLRSGWQLV FVDRENDVLL LGDGPWPEFV  840
NSVWCIKILS PEEVQDMGKR GLELLNSVPI QRLSNSTCDD YGSRQDSRNL ISGIASVGPL  900
DY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591535745388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1126740.0AB112674.1 Cucumis sativus CsARF4 mRNA for auxin response factor 4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444734.10.0PREDICTED: auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1S3BAJ50.0A0A1S3BAJ5_CUCME; Auxin response factor
STRINGXP_008444734.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]