PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C002691P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 257aa MW: 29028.4 Da PI: 9.4334 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.2 | 1.7e-31 | 33 | 82 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ MELO3C002691P1 33 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 82 79***********************************************8 PP | |||||||
2 | K-box | 110.6 | 1.6e-36 | 102 | 197 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + s++ea+++ +qqe+akL+++i nLq+ +RhllGe+++sLs+k+L++Le +Lek+l++iRs+Knell+++ie++qk+e el+ +n+ +r+k++ MELO3C002691P1 102 TAMSVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGLSRIRSRKNELLFSEIEYMQKREIELHTNNQLIRAKIA 196 455699***************************************************************************************98 PP K-box 100 e 100 e MELO3C002691P1 197 E 197 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.375 | 25 | 85 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-41 | 25 | 84 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.37E-33 | 26 | 98 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.42E-43 | 26 | 95 | No hit | No description |
PRINTS | PR00404 | 4.9E-33 | 27 | 47 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 27 | 81 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.8E-27 | 34 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-33 | 47 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-33 | 62 | 83 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.7E-26 | 108 | 195 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.899 | 111 | 201 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSCYEEEDEE SGVVGLRKSS SSSRTGRGKI EIKRIENTTN RQVTFCKRRN GLLKKAYELS 60 VLCDAEVALI VFSSRGRLYE YANNSVRATI SRYKKAYSDP STAMSVSEAN TQFYQQESAK 120 LRAQIGNLQN LNRHLLGESI SSLSVKDLKS LEVKLEKGLS RIRSRKNELL FSEIEYMQKR 180 EIELHTNNQL IRAKIAETER SQQNRNASNN GIAATGGRGD EGSMATNLEV NNHHHQYDST 240 NYFDPHHNHP ISLQLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 9e-22 | 26 | 100 | 2 | 75 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 9e-22 | 26 | 100 | 2 | 75 | Myocyte-specific enhancer factor 2B |
1tqe_R | 9e-22 | 26 | 100 | 2 | 75 | Myocyte-specific enhancer factor 2B |
1tqe_S | 9e-22 | 26 | 100 | 2 | 75 | Myocyte-specific enhancer factor 2B |
6byy_A | 1e-21 | 26 | 100 | 2 | 75 | MEF2 CHIMERA |
6byy_B | 1e-21 | 26 | 100 | 2 | 75 | MEF2 CHIMERA |
6byy_C | 1e-21 | 26 | 100 | 2 | 75 | MEF2 CHIMERA |
6byy_D | 1e-21 | 26 | 100 | 2 | 75 | MEF2 CHIMERA |
6c9l_A | 9e-22 | 26 | 100 | 2 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_B | 9e-22 | 26 | 100 | 2 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_C | 9e-22 | 26 | 100 | 2 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_D | 9e-22 | 26 | 100 | 2 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_E | 9e-22 | 26 | 100 | 2 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_F | 9e-22 | 26 | 100 | 2 | 75 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X97801 | 0.0 | X97801.1 C.sativus CUS1 mRNA for put. transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008443694.1 | 0.0 | PREDICTED: floral homeotic protein AGAMOUS-like | ||||
Swissprot | Q43585 | 1e-103 | AG_TOBAC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A1S3B8P7 | 0.0 | A0A1S3B8P7_CUCME; floral homeotic protein AGAMOUS-like | ||||
STRING | XP_008443688.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF684 | 29 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 2e-92 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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