PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C002654P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Trihelix | ||||||||
Protein Properties | Length: 179aa MW: 19625.8 Da PI: 8.2444 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52.1 | 1.7e-16 | 24 | 114 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Li+a ++ +l+rg+l++++W++v++ + ++ +r+ +qCk++++ ++k+yk ++++ + + + +s++p++ +l+ MELO3C002654P1 24 CWSEDATSTLIDAWGRRFLELNRGNLRQKDWQDVADSVnslhgLTKKTHRTDVQCKNRIDTVKKKYKTERARVSASHGNFVSSWPFYARLD 114 7**************************************9999999*************************99999999*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.6E-26 | 22 | 116 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGDLTDSHTP SSANSRQVPI REDCWSEDAT STLIDAWGRR FLELNRGNLR QKDWQDVADS 60 VNSLHGLTKK THRTDVQCKN RIDTVKKKYK TERARVSASH GNFVSSWPFY ARLDELIGPT 120 VSMKKPSSPP LALPLPFHVS FRRNYSAAAA AAAAVALSEE EEDEIVGGGG GGGESERR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016899611.1 | 1e-101 | PREDICTED: LOW QUALITY PROTEIN: trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 1e-32 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A1S4DUF0 | 1e-100 | A0A1S4DUF0_CUCME; LOW QUALITY PROTEIN: trihelix transcription factor ASIL2-like | ||||
STRING | XP_008443285.1 | 1e-99 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 5e-41 | sequence-specific DNA binding transcription factors |