PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002644P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 256aa    MW: 28018.9 Da    PI: 9.678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002644P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-1267113354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riNs +++Lr l+P +      K +Ka+ L ++v+ +k+L
  MELO3C002644P1  67 KNHSEAERRRRERINSHLSTLRGLVPCP-----VKRDKATLLAEVVRQVKEL 113
                     58*************************9.....7********9999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1864113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-967113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1268120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-1268119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1070119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.5E-5148197No hitNo description
CDDcd048731.50E-7151222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAYSYDASTS IDPFLHSLDN FNRGFVRGGS ILSQSLVLNG ERGELVKAPI QASKKRVSEE  60
KALAALKNHS EAERRRRERI NSHLSTLRGL VPCPVKRDKA TLLAEVVRQV KELKKKAAEA  120
SNGVFVPMDT DEVNVEPCGV GANGDMSFKA TLCCEYRPEL LSDLKQTLDS LHLKLVKAEI  180
STLGNRMKNI FIFTCSIAEN GDHPEASRRL ASSVHQAISF VLEKASSPEY SPRTTLPTKR  240
RRLSSLDTSS SSSGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277ERRRRE
2238242KRRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443115.10.0PREDICTED: putative transcription factor bHLH107
TrEMBLA0A1S3B7C10.0A0A1S3B7C1_CUCME; putative transcription factor bHLH107
STRINGXP_008443115.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.16e-42bHLH family protein