PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C002636P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 166aa MW: 18056.5 Da PI: 10.4188 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.3 | 4.1e-28 | 30 | 116 | 9 | 88 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg 88 k++T++g+R RR Rlsa++a++f+dLqd+LG ++ ++i+WLlq+akpai++l + ++ ++c sssss++++s + MELO3C002636P1 30 GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCrkqifslPVPSSSSSSQFQSYP 116 59*******************************************************777777884333332222222222222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 22.58 | 16 | 83 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.0E-24 | 31 | 122 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 166 aa Download sequence Send to blast |
MGSLDDHDKK KAKIGRRNRR LCSSAGAGAG KVYTSKGLRA RRLRLSAPTA IKFYDLQDRL 60 GCGRPTEAID WLLQNAKPAI DALSRPLQTE DNDCRKQIFS LPVPSSSSSS QFQSYPLQNF 120 SQKGNLSVFS PMILNVTTAG FSGTQPPCPS QSNVGAGFPF FPMWE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-16 | 31 | 83 | 2 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-16 | 31 | 83 | 2 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008443015.1 | 1e-119 | PREDICTED: transcription factor TCP10-like | ||||
TrEMBL | A0A1S3B7T4 | 1e-118 | A0A1S3B7T4_CUCME; transcription factor TCP10-like | ||||
STRING | XP_008443015.1 | 1e-119 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31070.1 | 1e-19 | TCP domain protein 10 |