PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C002617P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 355aa MW: 39330.9 Da PI: 7.5158

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C002617P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6.2e-39	70	129	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ l+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ MELO3C002617P1 70 QQEPLRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRL 129 57889*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	72	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-33	72	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.46	74	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MLGNCEKMVL ISSSPNQWPQ MMKNNNHPTS LDHDHQKGLN LIGSSSGIIM DNNNKQQDQK 60 TQQKQQQQHQ QEPLRCPRCD SSNTKFCYYN NYSLSQPRHF CKACKRYWTR GGTLRNVPVG 120 GGCRKNKRLK RPTIASTTTT VTHSSSSPAP TAPDSTSSSS TSCNTNPLHN IFYGSTSDLN 180 LPFSGYDHHH HNHLQTHLNA LGLGFSSPNI DHRDFNLNGF NSSSLLSGYS SLFGSNNNNP 240 SSNSTSISSL LASKFDPNLF GNLASSQPFD DHVMGSNGGD QLGLNVKDVK LEDGMKRLNW 300 EDDDHQQQNH QTDNEIVAQS NDDHHNSLFA NNWTSQNWHH DPPNLASSIT SSLI*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MLGNCEKMVL ISSSPNQWPQ MMKNNNHPTS LDHDHQKGLN LIGSSSGIIM DNNNKQQDQK  60
TQQKQQQQHQ QEPLRCPRCD SSNTKFCYYN NYSLSQPRHF CKACKRYWTR GGTLRNVPVG  120
GGCRKNKRLK RPTIASTTTT VTHSSSSPAP TAPDSTSSSS TSCNTNPLHN IFYGSTSDLN  180
LPFSGYDHHH HNHLQTHLNA LGLGFSSPNI DHRDFNLNGF NSSSLLSGYS SLFGSNNNNP  240
SSNSTSISSL LASKFDPNLF GNLASSQPFD DHVMGSNGGD QLGLNVKDVK LEDGMKRLNW  300
EDDDHQQQNH QTDNEIVAQS NDDHHNSLFA NNWTSQNWHH DPPNLASSIT SSLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008442739.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A1S3B763	0.0	A0A1S3B763_CUCME; dof zinc finger protein DOF1.4-like
STRING	XP_008442739.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	4e-34	Dof family protein