PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002522P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 330aa    MW: 37176.7 Da    PI: 5.173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002522P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.4e-062482851254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  MELO3C002522P1 248 RKEKLGDKITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 285
                     67788899********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.341236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-12246300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.48E-6246290No hitNo description
Gene3DG3DSA:4.10.280.101.5E-9250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MADEFPARSL FSAAVTNTSP CSVGNSTFLI DSTITSTSNW NQSFRGWDDG QRVDTTVVVD  60
SMTVTKLNYD DQEITSGSEG QQNPTSFFKT TDDDHDSLFL MEQPYNIQTA TNFYHNVVTT  120
TTRQGLPMAF PFEAISIGYT PTLLPCSSLN QPTQFVVNNR TINNCCSFTN SDELLSCSPM  180
FQTHLLHPPP LNFSNGITPK CPTKLMGCDE VVEDWSRVER ENESKEIAII KRPRSDNSSS  240
PLPTFKVRKE KLGDKITALQ QLVSPFGKTD TASVLHEAIE YIKFLHNQIR VLSTPYMEIG  300
DHNQEPKVKN NHTFLYYILR KNTDFFNMF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441703.10.0PREDICTED: transcription factor bHLH112-like isoform X1
TrEMBLA0A1S3B4S80.0A0A1S3B4S8_CUCME; transcription factor bHLH112-like isoform X1
STRINGXP_008441703.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2480622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.31e-29bHLH family protein