PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C002477P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 742aa MW: 82218.2 Da PI: 5.8674

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C002477P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.5e-19	64	119	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+ qVk+WFqN+R++ k MELO3C002477P1 64 RKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQIK 119 789999**********************************************9877 PP
2	START	185.5	2.9e-58	257	476	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ela +a++e+ ++a+++ep+Wv e++n+de+l++ ++ + + ea+r + ++ ++ +lv +l+d++ qW++ + +a tle MELO3C002477P1 257 ELAVSAMEEVCRMAQEGEPLWVIGEnsmEMLNEDEYLRTYSTRIGprivgLTFEASRQTSILAFNHLKLVHILMDVN-QWSTIFCgivsRALTLE 350 57899***************999999********99988****************************.**99999** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 v+ssg galq m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d ++ p+ R +++pSg+li++++ng+skvtwvehv+ MELO3C002477P1 351 VLSSGvggdynGALQIMTAEFQVPSPLVPtRENYFVRYCKQQGEGSWAVVDVSLDYLRPTPT----SRTRRRPSGCLIQELPNGYSKVTWVEHVE 441 *******************************************************995....78889******************** PP --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++r +h+l++ +v gla+gak+w+atl rqc++ MELO3C002477P1 442 VDDRAVHNLYKGVVTCGLAFGAKRWMATLSRQCQR 476 *******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-22	45	119	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.01E-19	51	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.73	61	121	IPR001356	Homeobox domain
SMART	SM00389	1.1E-17	62	125	IPR001356	Homeobox domain
Pfam	PF00046	6.3E-17	64	119	IPR001356	Homeobox domain
CDD	cd00086	4.33E-18	64	122	No hit	No description
PROSITE pattern	PS00027	0	96	119	IPR017970	Homeobox, conserved site
SuperFamily	SSF55961	3.17E-33	248	477	No hit	No description
PROSITE profile	PS50848	42.711	248	479	IPR002913	START domain
CDD	cd08875	2.87E-111	252	475	No hit	No description
SMART	SM00234	4.5E-58	257	476	IPR002913	START domain
Pfam	PF01852	5.7E-49	258	476	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	6.3E-5	359	443	IPR023393	START-like domain
SuperFamily	SSF55961	1.28E-22	503	731	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MFGAHGFEDH HHQDDLLLEM TQKNFETELE KFGEDEFESR SVTDAMDAPL GEEQCDLLNQ 60 RNKRKRYHRH TQLQIQEMEA FFKECPHPDD KQRKQLSREL GLEPLQVKFW FQNKRTQIKA 120 QQERHENAIL KAQNEKLRAE NMRYKEALTN TSCPNCGGPA ALGEMSFDAQ HLRIDNAQLR 180 DEIERLNGNN KYGGKGWGSH SSHIVSCGGQ VGRSSLKPQQ LQGDDHLLGE MYGETTTGIM 240 LKSSSVTTEI DKPVIVELAV SAMEEVCRMA QEGEPLWVIG ENSMEMLNED EYLRTYSTRI 300 GPRIVGLTFE ASRQTSILAF NHLKLVHILM DVNQWSTIFC GIVSRALTLE VLSSGVGGDY 360 NGALQIMTAE FQVPSPLVPT RENYFVRYCK QQGEGSWAVV DVSLDYLRPT PTSRTRRRPS 420 GCLIQELPNG YSKVTWVEHV EVDDRAVHNL YKGVVTCGLA FGAKRWMATL SRQCQRLTNS 480 SSTNIPALDI CVVTGQEGRK SVMKLAERMV RSFCSGVGAA TAHNWTTLST IDSDDVRVMA 540 RKSLDDPGRP PGIVLNAATS FWIPIPPNRV FNFLRDQNTR NQWDILSNGG LVQEMARIGN 600 DRNSGNCVSL LRVNSANSSQ SNMLILQESC SDDISGSYII YAPVDTVAMN MVLSGGDPDY 660 VALLPSGFAI LPDGPPIGPD GPPGILEFGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN 720 SLIKCTVERI RAALMCDQPI N*

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MFGAHGFEDH HHQDDLLLEM TQKNFETELE KFGEDEFESR SVTDAMDAPL GEEQCDLLNQ  60
RNKRKRYHRH TQLQIQEMEA FFKECPHPDD KQRKQLSREL GLEPLQVKFW FQNKRTQIKA  120
QQERHENAIL KAQNEKLRAE NMRYKEALTN TSCPNCGGPA ALGEMSFDAQ HLRIDNAQLR  180
DEIERLNGNN KYGGKGWGSH SSHIVSCGGQ VGRSSLKPQQ LQGDDHLLGE MYGETTTGIM  240
LKSSSVTTEI DKPVIVELAV SAMEEVCRMA QEGEPLWVIG ENSMEMLNED EYLRTYSTRI  300
GPRIVGLTFE ASRQTSILAF NHLKLVHILM DVNQWSTIFC GIVSRALTLE VLSSGVGGDY  360
NGALQIMTAE FQVPSPLVPT RENYFVRYCK QQGEGSWAVV DVSLDYLRPT PTSRTRRRPS  420
GCLIQELPNG YSKVTWVEHV EVDDRAVHNL YKGVVTCGLA FGAKRWMATL SRQCQRLTNS  480
SSTNIPALDI CVVTGQEGRK SVMKLAERMV RSFCSGVGAA TAHNWTTLST IDSDDVRVMA  540
RKSLDDPGRP PGIVLNAATS FWIPIPPNRV FNFLRDQNTR NQWDILSNGG LVQEMARIGN  600
DRNSGNCVSL LRVNSANSSQ SNMLILQESC SDDISGSYII YAPVDTVAMN MVLSGGDPDY  660
VALLPSGFAI LPDGPPIGPD GPPGILEFGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN  720
SLIKCTVERI RAALMCDQPI N*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008441375.1	0.0	PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A1S3B397	0.0	A0A1S3B397_CUCME; homeobox-leucine zipper protein PROTODERMAL FACTOR 2
STRING	XP_008441375.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24803	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21750.2	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]