PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C002209P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 334aa MW: 37254 Da PI: 4.4126 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 99 | 152 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k MELO3C002209P2 99 KKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 152 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.2 | 8.4e-42 | 98 | 188 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe+e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y +lk + e+L ke+++L++e+ MELO3C002209P2 98 EKKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKEKDSLKAEI 188 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.37E-19 | 84 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.265 | 94 | 154 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-19 | 97 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.25E-18 | 99 | 155 | No hit | No description |
Pfam | PF00046 | 1.4E-16 | 99 | 152 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-19 | 101 | 161 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.6E-6 | 125 | 134 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 129 | 152 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.6E-6 | 134 | 150 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.8E-14 | 154 | 195 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MAGRRVYGGD DGGSISGGSS NHSVLLQNCG GSFASEPLNA LFLSGSSSSS SPSLLGSRSM 60 MSFEDIRGGN GSNRSFFCPL DSEDNGDEDL DDYFHHPEKK RRLTVDQVRF LEKSFETENK 120 LEPERKVQLA KDLGLQPRQV AIWFQNRRAR WKTKQLEKDY EALQSSYGSL KVDYENLLKE 180 KDSLKAEILL LTDKLLHKEK ERGNSVLSEV DKFGEELPHN LVADSNLEDE VSKSSKLGCK 240 QEDISSVKSD LCDSDSPHYT DGVHSSLLEP GDSSYIFDPD QSDLSQDEED NLGRNLLPPY 300 IFPKLEDVDY SDPPTSSCNF VFPIEDNALW SWS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 154 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437631.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2 | ||||
TrEMBL | A0A1S3AV26 | 0.0 | A0A1S3AV26_CUCME; homeobox-leucine zipper protein HAT5-like isoform X2 | ||||
STRING | XP_008437622.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-44 | homeobox 1 |