PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C002155P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 427aa MW: 48940.9 Da PI: 9.023

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C002155P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	4.9e-06	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H MELO3C002155P1 57 YVCEICNQGFQRDQNLQMHRRRH 79 9*********************9 PP
2	zf-C2H2	16.1	3.1e-05	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ MELO3C002155P1 136 WVCEKCSKGYAVQSDYKAHLKTC 158 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.04E-5	56	79	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	56	79	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.97	57	79	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	57	79	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	100	130	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.4E-4	127	157	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.04E-5	131	156	No hit	No description
SMART	SM00355	60	136	163	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MLADLSSPSL PCFEPLSNCF ENNGTNNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE 60 ICNQGFQRDQ NLQMHRRRHK VPWKLLKRTE ATTVVRKRVF VCPEPSCLHH NPTHALGDLV 120 GIKKHFRRKH SNHKQWVCEK CSKGYAVQSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH 180 QDNCKLGHHH HHQQQQSDQK IPCLSRTASS PTPSPSSDTN FSFLNQNQNQ NQNPKFTSTH 240 HHNHGADKYS KKTTIIPQRI IGHNHQNLDL QLSTNSTTSI HVSVSPKRHE NYSTHLQLSI 300 GSCNYGEKLH DHHDNNNNNN SNDHDHNDDD NDEKLGLLKL KEEAKEQMRM AMEEKAMAEE 360 ARNEAKKQIE MAEKELVNAK RMRQQAQAEL QRALVLKEHA IKKINSTILQ ITCQVCRQHF 420 HPFPKI*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MLADLSSPSL PCFEPLSNCF ENNGTNNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRTE ATTVVRKRVF VCPEPSCLHH NPTHALGDLV  120
GIKKHFRRKH SNHKQWVCEK CSKGYAVQSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH  180
QDNCKLGHHH HHQQQQSDQK IPCLSRTASS PTPSPSSDTN FSFLNQNQNQ NQNPKFTSTH  240
HHNHGADKYS KKTTIIPQRI IGHNHQNLDL QLSTNSTTSI HVSVSPKRHE NYSTHLQLSI  300
GSCNYGEKLH DHHDNNNNNN SNDHDHNDDD NDEKLGLLKL KEEAKEQMRM AMEEKAMAEE  360
ARNEAKKQIE MAEKELVNAK RMRQQAQAEL QRALVLKEHA IKKINSTILQ ITCQVCRQHF  420
HPFPKI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-18	132	184	3	55	Zinc finger protein JACKDAW
5b3h_F	8e-18	132	184	3	55	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008467125.1	0.0	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	1e-125	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A1S3CSS3	0.0	A0A1S3CSS3_CUCME; protein SHOOT GRAVITROPISM 5-like
STRING	XP_008467125.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1769	32	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-108	C2H2-like zinc finger protein

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]