PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C002076P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 272aa MW: 30977.1 Da PI: 10.5907 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 84.5 | 2.6e-26 | 32 | 158 | 3 | 133 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..kaaksaa 95 kkdrhski T++g RdRR+Rls+++a++fF Lqd+LG+dk skt+e ++ ++++++ ++ + +++ ++++ k++ ++ MELO3C002076P1 32 SKKDRHSKITTAKGVRDRRMRLSLPVAKQFFGLQDMLGVDKGSKTVEC---NSSSNYSNSSELDNEAGVIIGDQ--NLNTKDNNIKinKKKIKK- 120 69*********************************************8...44444444444434444222333..333333444432333333. PP TCP 96 kskksqksaasalnlakesrakarararertrekmrik 133 k+ + k+ +ake r+kar+rar rt ek++++ MELO3C002076P1 121 KKIMRAKQLPIRKTMAKELREKARERARARTLEKQKNQ 158 44444444444689999*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-23 | 32 | 78 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 23.765 | 33 | 91 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.959 | 137 | 154 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
SPPIDNMSMM MMNSDHKMKK MMKKVPQRKR LSKKDRHSKI TTAKGVRDRR MRLSLPVAKQ 60 FFGLQDMLGV DKGSKTVECN SSSNYSNSSE LDNEAGVIIG DQNLNTKDNN IKINKKKIKK 120 KKIMRAKQLP IRKTMAKELR EKARERARAR TLEKQKNQLF IRDSACCSYD HQPNFTNINS 180 SSSWSSPFET TGGEESAGTT HQSYNNNNHP ITSQFDSQFH QNFSSFDAIL PKWSPSDDST 240 FNFLHQQVYG LVASMLQVNN MGFYSQFSQG N* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011650456.1 | 1e-132 | PREDICTED: transcription factor TCP18-like | ||||
TrEMBL | A0A0A0LVQ1 | 1e-130 | A0A0A0LVQ1_CUCSA; Uncharacterized protein | ||||
STRING | XP_008456501.1 | 1e-121 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 5e-19 | TCP family protein |