PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002057P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 455aa    MW: 50436.2 Da    PI: 8.9666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002057P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.74.3e-18232281255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f++Lrel+P +    ++K +Ka+ L +++eYI+ Lq
  MELO3C002057P3 232 RSKHSATEQRRRSKINDRFQKLRELIPRS----DQKRDKASFLLEVIEYIQFLQ 281
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-22227289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-18229289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.091230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-15232285No hitNo description
PfamPF000101.4E-15232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MRTGGFLKTH DFLRPLERTG KTCAKEEKTI NVSTVERAAP TSGTQAHNSP AERLLPGGIG  60
TYSISHISYF NQRVPKPEGS VFPVPQASNT DKSDDNSHCS SLSGNGFTLW EESAVKKGKT  120
RKENLGEKPG LKESPAKIEQ WAVTTERPIQ SSSSNHRSSF SSLSPSQPSG QQSRSFGEML  180
KSTVNVSSTE EELDDDKAFV IKKESSPSTA YKGDLKINIG GKCSDQKANT PRSKHSATEQ  240
RRRSKINDRF QKLRELIPRS DQKRDKASFL LEVIEYIQFL QEKVRKYESS PPQGWYHEPA  300
KLIPCRNNCN PAQCYIDQSQ IAKSGPVFIF AGSDEKNMCH SPAFPRCSHN PVESEVSTNT  360
TFREVDQHPG TNNKTSYPML EPRHFTSVIS EGAKTRLHSQ VAHNADNKPC EMQPLSCEVR  420
SCTTNIVDVN NKLKEPEQRI DGGRISISGA YSQG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454530.10.0PREDICTED: transcription factor BIM1-like isoform X2
TrEMBLA0A1S3BYT80.0A0A1S3BYT8_CUCME; transcription factor BIM1-like isoform X2
STRINGXP_008454530.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.44e-72bHLH family protein