PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002049P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 259aa    MW: 28883.6 Da    PI: 8.1065
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002049P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.2e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdae a+iifs++gkl+e++s
  MELO3C002049P1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCS 59
                    79***********************************************96 PP
2K-box87.33e-298517410100
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + +++ ++  ++ +Lk+ +e +q++qR+llGedL++L+ +eL+qLe+qLe+sl++iRs+K++ ll+q+ elq+ke++l e+n+ L+kklee
  MELO3C002049P1  85 S-ENQPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNAQELEQLEHQLETSLERIRSTKTQSLLAQLAELQQKEHMLVEDNRGLKKKLEE 174
                     3.44445667999***************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.45161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-32275IPR002100Transcription factor, MADS-box
CDDcd002654.76E-42276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-32323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.73588178IPR002487Transcription factor, K-box
PfamPF014865.0E-2489172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AELALIIFSN RGKLFEFCSG  60
SSMTKTLEKY RRCSYGIMNA THQVSENQPQ SFDDYLNLKA TVEFMQQSQR NLLGEDLGPL  120
NAQELEQLEH QLETSLERIR STKTQSLLAQ LAELQQKEHM LVEDNRGLKK KLEESSAQVA  180
VAAAAAWGWE GGAGGGHNME YPSRGVASQS DAFFHPRIQH TPTLQIGYNS IGSMGLNHVG  240
SDPSQNVNSN AFHLGWMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20170169MEF2C
5f28_B1e-20170169MEF2C
5f28_C1e-20170169MEF2C
5f28_D1e-20170169MEF2C
6byy_A2e-20170169MEF2 CHIMERA
6byy_B2e-20170169MEF2 CHIMERA
6byy_C2e-20170169MEF2 CHIMERA
6byy_D2e-20170169MEF2 CHIMERA
6bz1_A2e-20170169MEF2 CHIMERA
6bz1_B2e-20170169MEF2 CHIMERA
6bz1_C2e-20170169MEF2 CHIMERA
6bz1_D2e-20170169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819323e-98LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132663e-98LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453505.10.0PREDICTED: MADS-box protein CMB1-like isoform X3
SwissprotQ8LLR29e-98MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1S3BWE30.0A0A1S3BWE3_CUCME; MADS-box protein CMB1-like isoform X3
STRINGXP_008453343.11e-171(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.17e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]