PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002012P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 215aa    MW: 23917.9 Da    PI: 10.0277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002012P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.34.9e-173076455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  MELO3C002012P2 30 VHNQSERRRRDRINEKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 76
                    6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.03E-192487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.0572675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-143076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-203085IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-163180No hitNo description
SMARTSM003536.4E-183281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVQENQEEEQ DTKRVANRSH SARRSRAAAV HNQSERRRRD RINEKMKALQ KLVPNASKTD  60
KASMLDEVIE YLKQLQAQVQ FMSVRSMQQM IMPIGIQQQL QMSLLARMGM GVGLGMGMGM  120
LDMSGMPRSA PQALPPLIHP TSVPSTPPAF VPPHFLLPPA IPRQDPTQAK PATNGSVDPF  180
CAFLAQVSDI GFLYPSLVLV FFFICDNLIF LCRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13439ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447543.11e-109PREDICTED: transcription factor PIF7-like isoform X1
RefseqXP_008447613.11e-110PREDICTED: transcription factor PIF7-like isoform X2
TrEMBLA0A1S3BHA01e-109A0A1S3BHA0_CUCME; transcription factor PIF7-like isoform X2
TrEMBLA0A1S3BIK81e-108A0A1S3BIK8_CUCME; transcription factor PIF7-like isoform X1
STRINGXP_008447543.11e-109(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-24bHLH family protein