PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C001987P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 439aa MW: 48279.1 Da PI: 7.8

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C001987P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	105	165	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrk+k+s MELO3C001987P1 105 PDKLLPCPRCKSMETKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKSKNSA 165 78999****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-31	93	162	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	107	163	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.537	109	163	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MLDSKDPTIK LFGRQIPLSD DAETPAVLSH DFSSHKHPEP RKDAAIDEPE KPVDDSDDLR 60 NIEREEEAAS VNPKTPSIDE ETTTTPVNGE PESEKSNSEK TLKKPDKLLP CPRCKSMETK 120 FCYYNNYNVN QPRHFCKACQ RYWTAGGTMR NVPVGAGRRK SKNSASYYRH ITISEALEAA 180 RIESPNGTQK PKFINNNGRV LSFNLDAPSS DPVMGSILNL GENRVLSNGV KKFEEKAVDQ 240 GCEKNSSLSS MPVQSSSELK INGFPSQISC LSGVPWPFVW NSSVPPPTFT PPGFPLSFFP 300 AAAWNSGVPG PWNTPWFSPQ PEKSLCSDTK ASSTLGKHQR DHEMAKEDAI SSKEEVFKQR 360 NGHVLTPKTL RIDDPSEAAK SSIWATLGIK NESLTGGKNL FKTFQPKGHQ KVHVAETSSV 420 LQANPAALSR SLVFHESS*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MLDSKDPTIK LFGRQIPLSD DAETPAVLSH DFSSHKHPEP RKDAAIDEPE KPVDDSDDLR  60
NIEREEEAAS VNPKTPSIDE ETTTTPVNGE PESEKSNSEK TLKKPDKLLP CPRCKSMETK  120
FCYYNNYNVN QPRHFCKACQ RYWTAGGTMR NVPVGAGRRK SKNSASYYRH ITISEALEAA  180
RIESPNGTQK PKFINNNGRV LSFNLDAPSS DPVMGSILNL GENRVLSNGV KKFEEKAVDQ  240
GCEKNSSLSS MPVQSSSELK INGFPSQISC LSGVPWPFVW NSSVPPPTFT PPGFPLSFFP  300
AAAWNSGVPG PWNTPWFSPQ PEKSLCSDTK ASSTLGKHQR DHEMAKEDAI SSKEEVFKQR  360
NGHVLTPKTL RIDDPSEAAK SSIWATLGIK NESLTGGKNL FKTFQPKGHQ KVHVAETSSV  420
LQANPAALSR SLVFHESS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008442918.1	0.0	PREDICTED: cyclic dof factor 3
TrEMBL	A0A1S3B7K6	0.0	A0A1S3B7K6_CUCME; cyclic dof factor 3
STRING	XP_008442918.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	7e-98	cycling DOF factor 3