PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C000260P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family M-type_MADS
Protein Properties Length: 62aa    MW: 7108.28 Da    PI: 10.5325
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C000260P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF103.11e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey++
  MELO3C000260P1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYAN 59
                    79***********************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.824161IPR002100Transcription factor, MADS-box
SMARTSM004329.4E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-30260IPR002100Transcription factor, MADS-box
CDDcd002653.62E-39260No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-34323IPR002100Transcription factor, MADS-box
PfamPF003197.9E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-342338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-343859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN  60
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-22159159Myocyte-specific enhancer factor 2B
1tqe_Q7e-22159159Myocyte-specific enhancer factor 2B
1tqe_R7e-22159159Myocyte-specific enhancer factor 2B
1tqe_S7e-22159159Myocyte-specific enhancer factor 2B
6c9l_A7e-22159159Myocyte-specific enhancer factor 2B
6c9l_B7e-22159159Myocyte-specific enhancer factor 2B
6c9l_C7e-22159159Myocyte-specific enhancer factor 2B
6c9l_D7e-22159159Myocyte-specific enhancer factor 2B
6c9l_E7e-22159159Myocyte-specific enhancer factor 2B
6c9l_F7e-22159159Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6847572e-99LN684757.1 Cucumis melo genomic scaffold, unassembled_sequence32319.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146364.12e-37hypothetical protein PHAVU_006G034400g
SwissprotQ407043e-37MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA2WLS92e-36A2WLS9_ORYSI; Uncharacterized protein
TrEMBLB9ETY51e-36B9ETY5_ORYSJ; Uncharacterized protein
STRINGXP_007146364.17e-37(Phaseolus vulgaris)
STRINGOS01T0201700-011e-36(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.22e-39MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]