PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C000099P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ZF-HD
Protein Properties Length: 316aa    MW: 34126.8 Da    PI: 8.4283
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C000099P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.91.2e-3364120358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                      v YkeClkNhAa+lG+ha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr++e
  MELO3C000099P1  64 VVSYKECLKNHAATLGAHALDGCGEFMPSPSATpSDPTSLRCAACGCHRNFHRRDPE 120
                     589*****************************99********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.6E-2865119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-1765121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.4E-3067118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.43467118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.18E-18194268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-29195269IPR009057Homeodomain-like
TIGRFAMsTIGR015652.6E-27207264IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDLAPAPITT SSNNTKSPDA DSDTPTKIPP SFTNGVLKRH HHHNHHHHHH HRPPSSSSSS  60
STVVVSYKEC LKNHAATLGA HALDGCGEFM PSPSATPSDP TSLRCAACGC HRNFHRRDPE  120
DPISTLAINT APTHVIEYQP HHRHHPPPPP LAGNRSPNSA SPPPISSSYY PSAPHMLLAL  180
SAGLSGRPPE NHTQGNNSVP TVSPNTRKRF RTKFSNEQKE KMLDFAERVG WKMQKRDDDL  240
VRDFCNQVGV ERGVLKVWMH NNKNTMGKKP DSNGDVTATA IATVAAAIAT VNNHEDEPDG  300
GLHMHIGSNG SSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-242062651675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6838640.0LN683864.1 Cucumis melo genomic scaffold, unassembled_sequence31355.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008467057.10.0PREDICTED: zinc-finger homeodomain protein 10-like
SwissprotQ9LXG01e-70ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1S3CST80.0A0A1S3CST8_CUCME; zinc-finger homeodomain protein 10-like
STRINGXP_008467057.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.14e-63homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]