PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla023456

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

WOX

Protein Properties

Length: 274aa MW: 31357 Da PI: 5.6198

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla023456	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.4e-21	101	161	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ Cla023456 101 RQRWTPTPVQLQILEQIFDEgNGTPSKQKIKDITLQLtqhgQISEANVYNWFQNRRARSKR 161 89***************99************************************97 PP
2	Wus_type_Homeobox	101.4	6.4e-33	100	163	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it +L+++G+i+++NV++WFQNr+aR+++kq Cla023456 100 ARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQ 163 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.495	97	162	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.8E-17	97	166	IPR009057	Homeodomain-like
SMART	SM00389	4.6E-12	99	166	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.1E-17	100	163	IPR009057	Homeodomain-like
Pfam	PF00046	8.9E-19	101	161	IPR001356	Homeobox domain
CDD	cd00086	2.98E-13	101	163	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MMEWQNQQQQ NQTEQLQMQM QMQVEQLSNA DGVNGLYVKV MTDEQMELLR QQISVYASIC 60 EQLVEMHKAI TAQQDLAGMR LGNLYCDPIM ASAAGHKITA RQRWTPTPVQ LQILEQIFDE 120 GNGTPSKQKI KDITLQLTQH GQISEANVYN WFQNRRARSK RKQANSVPNN ADSEPETEVD 180 SPKEKKTKPE TFQTYEHFVP KSGNMYSQRT DFGTEILSFD AQSNKGEPMF QSFGSGHISQ 240 MNPLQNHRNN LSNDKMNVAD YSPYTPCEGY HLAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	162	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	0.0	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004145546.1	0.0	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-77	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A0A0L5X4	0.0	A0A0A0L5X4_CUCSA; Uncharacterized protein
STRING	XP_004166813.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-73	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]